Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 PSMC1P13-201ENST00000458195 985 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.31□□□□□ -1.72
FOXA1P55317 AC011005.3-201ENST00000491624 395 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 MTND6P33-201ENST00000571794 183 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 MIR3934-201ENST00000579806 107 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 AC107993.1-201ENST00000591343 684 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 AC005034.4-201ENST00000603612 899 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 MIR7155-201ENST00000615925 56 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 MIR6891-201ENST00000618788 93 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 AL445528.2-201ENST00000620582 470 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 AC006065.6-201ENST00000625201 545 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 MAPK10-286ENST00000641208 8747 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 SDAD1P1-202ENST00000524156 2051 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
FOXA1P55317 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
FOXA1P55317 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA1P55317 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
FOXA1P55317 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 RN7SKP106-201ENST00000410832 272 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 GSTM3P2-201ENST00000412746 530 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 AC007394.1-201ENST00000421941 531 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 NPM1P26-201ENST00000426339 738 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA1P55317 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.3□□□□□ -1.72
FOXA1P55317 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA1P55317 UBE2V1P3-201ENST00000439651 417 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA1P55317 RPS26P28-201ENST00000470806 348 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA1P55317 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.3□□□□□ -1.72
FOXA1P55317 NDUFB5P1-201ENST00000508134 564 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA1P55317 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA1P55317 AP000676.2-201ENST00000529711 301 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 AL121834.1-201ENST00000572284 509 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA1P55317 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA1P55317 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA1P55317 AC079298.2-201ENST00000623885 459 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA1P55317 AC105074.1-201ENST00000623380 3095 ntBASIC4.3□□□□□ -1.72
FOXA1P55317 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
FOXA1P55317 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
FOXA1P55317 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA1P55317 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.29□□□□□ -1.72
FOXA1P55317 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.29□□□□□ -1.72
FOXA1P55317 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.29□□□□□ -1.72
FOXA1P55317 OR51H2P-202ENST00000641424 3046 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AC104118.1-201ENST00000607625 1589 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 RNU1-108P-201ENST00000362556 161 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA1P55317 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA1P55317 AL645733.1-201ENST00000402250 217 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 RPS20P14-201ENST00000412545 360 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 SNRPFP1-201ENST00000414761 252 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 UBTFL3-201ENST00000418934 1024 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 GEMIN8P3-201ENST00000445417 720 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA1P55317 CEACAMP6-201ENST00000452007 574 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 RPS27AP17-201ENST00000463344 455 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 UBTFL6-201ENST00000477929 1024 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 RPL32P9-201ENST00000487963 407 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AC093890.1-201ENST00000502554 540 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA1P55317 PPBPP1-201ENST00000510807 373 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AC015795.1-201ENST00000513669 327 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA1P55317 AL671862.1-201ENST00000515851 349 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC4.29□□□□□ -1.72
FOXA1P55317 AP001922.4-201ENST00000526967 290 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 BRD9P1-201ENST00000529855 560 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AP001781.1-201ENST00000530977 207 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 GLRXP2-201ENST00000555594 321 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AC011270.1-201ENST00000558606 583 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AC044860.2-201ENST00000561005 179 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.29□□□□□ -1.72
FOXA1P55317 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms