Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.37□□□□□ -1.71
CDX1P47902 SPRYD7P1-201ENST00000443861 570 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.37□□□□□ -1.71
CDX1P47902 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 PTMAP3-201ENST00000447474 330 ntBASIC4.37□□□□□ -1.71
CDX1P47902 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.37□□□□□ -1.71
CDX1P47902 HMGN1P5-201ENST00000448591 263 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AL096803.2-201ENST00000450032 677 ntBASIC4.37□□□□□ -1.71
CDX1P47902 RPL37P3-201ENST00000456825 293 ntBASIC4.37□□□□□ -1.71
CDX1P47902 PSAT1P4-201ENST00000466500 526 ntBASIC4.37□□□□□ -1.71
CDX1P47902 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 AL161747.1-201ENST00000480068 358 ntBASIC4.37□□□□□ -1.71
CDX1P47902 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 RPS7P6-201ENST00000485777 579 ntBASIC4.37□□□□□ -1.71
CDX1P47902 DUTP1-201ENST00000493631 470 ntBASIC4.37□□□□□ -1.71
CDX1P47902 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 AC008565.1-201ENST00000509046 885 ntBASIC4.37□□□□□ -1.71
CDX1P47902 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 BX510359.5-201ENST00000515651 304 ntBASIC4.37□□□□□ -1.71
CDX1P47902 RNU6-941P-201ENST00000516346 108 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AC083923.1-201ENST00000523708 376 ntBASIC4.37□□□□□ -1.71
CDX1P47902 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.37□□□□□ -1.71
CDX1P47902 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC4.37□□□□□ -1.71
CDX1P47902 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.37□□□□□ -1.71
CDX1P47902 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.37□□□□□ -1.71
CDX1P47902 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 MRPS21P7-201ENST00000566937 238 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.37□□□□□ -1.71
CDX1P47902 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.37□□□□□ -1.71
CDX1P47902 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC4.37□□□□□ -1.71
CDX1P47902 AC008759.3-201ENST00000613300 508 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AC022467.1-201ENST00000614738 749 ntBASIC4.37□□□□□ -1.71
CDX1P47902 FRG1HP-204ENST00000617940 757 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AC073869.10-201ENST00000642016 354 ntBASIC4.37□□□□□ -1.71
CDX1P47902 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CDX1P47902 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.37□□□□□ -1.71
CDX1P47902 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.37□□□□□ -1.71
CDX1P47902 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
CDX1P47902 AL451142.2-201ENST00000429076 2090 ntBASIC4.37□□□□□ -1.71
CDX1P47902 CIR1P2-201ENST00000514821 1342 ntBASIC4.37□□□□□ -1.71
CDX1P47902 AL445437.1-201ENST00000623157 3087 ntBASIC4.37□□□□□ -1.71
CDX1P47902 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CDX1P47902 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.36□□□□□ -1.71
CDX1P47902 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
CDX1P47902 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CDX1P47902 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 RNA5SP319-201ENST00000362768 119 ntBASIC4.36□□□□□ -1.71
CDX1P47902 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 RN7SKP125-201ENST00000410481 302 ntBASIC4.36□□□□□ -1.71
CDX1P47902 RPS6P23-201ENST00000413224 722 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 PCNPP4-201ENST00000414817 517 ntBASIC4.36□□□□□ -1.71
CDX1P47902 CYCSP10-201ENST00000417973 294 ntBASIC4.36□□□□□ -1.71
CDX1P47902 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 RPL36AP10-201ENST00000421785 322 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.36□□□□□ -1.71
CDX1P47902 AL158073.1-201ENST00000426848 1104 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.36□□□□□ -1.71
CDX1P47902 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.36□□□□□ -1.71
CDX1P47902 AC092170.1-201ENST00000440211 356 ntBASIC4.36□□□□□ -1.71
CDX1P47902 CYCSP24-201ENST00000445119 316 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC068135.1-201ENST00000446164 246 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 AC073587.1-201ENST00000447093 876 ntBASIC4.36□□□□□ -1.71
CDX1P47902 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.36□□□□□ -1.71
CDX1P47902 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CDX1P47902 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.36□□□□□ -1.71
CDX1P47902 RPL23AP71-201ENST00000470966 469 ntBASIC4.36□□□□□ -1.71
CDX1P47902 RPS17P11-201ENST00000474297 293 ntBASIC4.36□□□□□ -1.71
CDX1P47902 AC108693.1-201ENST00000496068 432 ntBASIC4.36□□□□□ -1.71
CDX1P47902 RPS17P5-201ENST00000498293 408 ntBASIC4.36□□□□□ -1.71
CDX1P47902 RPEP1-201ENST00000504507 658 ntBASIC4.36□□□□□ -1.71
CDX1P47902 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.36□□□□□ -1.71
CDX1P47902 HMGB3P16-201ENST00000508037 287 ntBASIC4.36□□□□□ -1.71
CDX1P47902 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.36□□□□□ -1.71
CDX1P47902 MTCO3P27-201ENST00000514397 196 ntBASIC4.36□□□□□ -1.71
CDX1P47902 EIF3KP3-201ENST00000514461 639 ntBASIC4.36□□□□□ -1.71
CDX1P47902 RNA5SP362-201ENST00000516048 118 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms