Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
CUX1P39880 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CUX1P39880 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC7.41□□□□□ -1.22
CUX1P39880 RNA5SP124-201ENST00000362739 110 ntBASIC7.41□□□□□ -1.22
CUX1P39880 RNU1-14P-201ENST00000362759 152 ntBASIC7.41□□□□□ -1.22
CUX1P39880 MIR670-201ENST00000390142 98 ntBASIC7.41□□□□□ -1.22
CUX1P39880 GLS-204ENST00000409428 816 ntTSL 2 BASIC7.41□□□□□ -1.22
CUX1P39880 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CUX1P39880 AL445584.1-201ENST00000431451 330 ntBASIC7.41□□□□□ -1.22
CUX1P39880 MRPS21P3-201ENST00000436696 262 ntBASIC7.41□□□□□ -1.22
CUX1P39880 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC7.41□□□□□ -1.22
CUX1P39880 AP005901.4-201ENST00000577336 569 ntBASIC7.41□□□□□ -1.22
CUX1P39880 AC027216.1-201ENST00000577726 685 ntBASIC7.41□□□□□ -1.22
CUX1P39880 FAM27D1-201ENST00000612308 341 ntBASIC7.41□□□□□ -1.22
CUX1P39880 FRG1EP-201ENST00000634469 770 ntBASIC7.41□□□□□ -1.22
CUX1P39880 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
CUX1P39880 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CUX1P39880 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
CUX1P39880 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CUX1P39880 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
CUX1P39880 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC7.4□□□□□ -1.22
CUX1P39880 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC7.4□□□□□ -1.22
CUX1P39880 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
CUX1P39880 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC7.4□□□□□ -1.22
CUX1P39880 AC009237.5-201ENST00000414271 501 ntBASIC7.4□□□□□ -1.22
CUX1P39880 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC7.4□□□□□ -1.22
CUX1P39880 MRPL50P1-201ENST00000431951 384 ntBASIC7.4□□□□□ -1.22
CUX1P39880 UBE2V1P3-201ENST00000439651 417 ntBASIC7.4□□□□□ -1.22
CUX1P39880 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC7.4□□□□□ -1.22
CUX1P39880 AC012671.1-201ENST00000451912 203 ntBASIC7.4□□□□□ -1.22
CUX1P39880 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC7.4□□□□□ -1.22
CUX1P39880 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC7.4□□□□□ -1.22
CUX1P39880 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
CUX1P39880 MIR6875-201ENST00000617506 72 ntBASIC7.4□□□□□ -1.22
CUX1P39880 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CUX1P39880 AC140134.1-201ENST00000511830 3544 ntBASIC7.4□□□□□ -1.23
CUX1P39880 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC7.4□□□□□ -1.23
CUX1P39880 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC7.39□□□□□ -1.23
CUX1P39880 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC7.39□□□□□ -1.23
CUX1P39880 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC7.39□□□□□ -1.23
CUX1P39880 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC7.39□□□□□ -1.23
CUX1P39880 AC100778.3-201ENST00000580060 1750 ntBASIC7.39□□□□□ -1.23
CUX1P39880 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC7.39□□□□□ -1.23
CUX1P39880 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
CUX1P39880 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CUX1P39880 SNORA74C-2-201ENST00000411179 201 ntBASIC7.39□□□□□ -1.23
CUX1P39880 COX6B1P7-201ENST00000430845 235 ntBASIC7.39□□□□□ -1.23
CUX1P39880 RPEP2-201ENST00000432149 701 ntBASIC7.39□□□□□ -1.23
CUX1P39880 AL162151.2-201ENST00000448875 158 ntBASIC7.39□□□□□ -1.23
CUX1P39880 AC091959.2-201ENST00000477363 321 ntBASIC7.39□□□□□ -1.23
CUX1P39880 ENSA-211ENST00000503345 793 ntTSL 3 BASIC7.39□□□□□ -1.23
CUX1P39880 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC7.39□□□□□ -1.23
CUX1P39880 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC7.39□□□□□ -1.23
CUX1P39880 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
CUX1P39880 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CUX1P39880 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
CUX1P39880 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC7.38□□□□□ -1.23
CUX1P39880 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CUX1P39880 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC7.38□□□□□ -1.23
CUX1P39880 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC7.38□□□□□ -1.23
CUX1P39880 AC079804.1-201ENST00000461922 436 ntBASIC7.38□□□□□ -1.23
CUX1P39880 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC7.38□□□□□ -1.23
CUX1P39880 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC7.38□□□□□ -1.23
CUX1P39880 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC7.38□□□□□ -1.23
CUX1P39880 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC7.38□□□□□ -1.23
CUX1P39880 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC7.38□□□□□ -1.23
CUX1P39880 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC7.38□□□□□ -1.23
CUX1P39880 AC027228.2-201ENST00000567141 2154 ntBASIC7.38□□□□□ -1.23
CUX1P39880 AP005435.3-201ENST00000531260 3198 ntBASIC7.38□□□□□ -1.23
CUX1P39880 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CUX1P39880 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC7.38□□□□□ -1.23
CUX1P39880 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CUX1P39880 AC004938.1-201ENST00000438468 308 ntBASIC7.37□□□□□ -1.23
CUX1P39880 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC7.37□□□□□ -1.23
CUX1P39880 PARP4P3-201ENST00000510265 317 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC099522.1-202ENST00000514718 367 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC7.37□□□□□ -1.23
CUX1P39880 IGLVVI-25-1-201ENST00000521893 249 ntBASIC7.37□□□□□ -1.23
CUX1P39880 ADAD1P2-201ENST00000588476 646 ntBASIC7.37□□□□□ -1.23
CUX1P39880 RNU4-89P-201ENST00000607443 133 ntBASIC7.37□□□□□ -1.23
CUX1P39880 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
CUX1P39880 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CUX1P39880 AL133243.3-201ENST00000617415 3004 ntBASIC7.37□□□□□ -1.23
CUX1P39880 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CUX1P39880 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC7.37□□□□□ -1.23
CUX1P39880 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC7.37□□□□□ -1.23
CUX1P39880 RNU1-63P-201ENST00000383902 164 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC7.37□□□□□ -1.23
CUX1P39880 VN1R34P-201ENST00000447387 883 ntBASIC7.37□□□□□ -1.23
CUX1P39880 RPL23AP2-201ENST00000471227 466 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC020890.1-201ENST00000491837 504 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC146944.2-203ENST00000502493 354 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC7.37□□□□□ -1.23
CUX1P39880 AL592156.1-201ENST00000508758 304 ntBASIC7.37□□□□□ -1.23
CUX1P39880 NPM1P41-201ENST00000512920 831 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC139495.1-202ENST00000513164 354 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC7.37□□□□□ -1.23
CUX1P39880 AC105233.3-201ENST00000531125 744 ntBASIC7.37□□□□□ -1.23
CUX1P39880 AC053481.4-201ENST00000583164 216 ntBASIC7.37□□□□□ -1.23
CUX1P39880 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC7.37□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms