Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.718-201ENST00000517110 102 ntBASIC6.64□□□□□ -1.35
MSX1P28360 RN7SKP256-201ENST00000517201 314 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 AC130366.1-201ENST00000526505 1192 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX1P28360 NDUFA3P2-201ENST00000531434 232 ntBASIC6.64□□□□□ -1.35
MSX1P28360 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.64□□□□□ -1.35
MSX1P28360 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX1P28360 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX1P28360 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.64□□□□□ -1.35
MSX1P28360 AC126323.4-201ENST00000566935 234 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AC015801.1-201ENST00000585651 153 ntBASIC6.64□□□□□ -1.35
MSX1P28360 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 AC011468.4-201ENST00000603942 409 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AL355333.1-201ENST00000605632 279 ntBASIC6.64□□□□□ -1.35
MSX1P28360 BX323046.1-201ENST00000610145 535 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AL121782.1-201ENST00000611242 413 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AL161931.1-201ENST00000612768 246 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AC084781.2-201ENST00000615568 161 ntBASIC6.64□□□□□ -1.35
MSX1P28360 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 AC125232.1-201ENST00000452554 1408 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AP002907.1-201ENST00000606361 1430 ntBASIC6.64□□□□□ -1.35
MSX1P28360 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 LCOR-201ENST00000286067 4542 ntBASIC6.64□□□□□ -1.35
MSX1P28360 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 AC090017.1-201ENST00000548612 1779 ntBASIC6.64□□□□□ -1.35
MSX1P28360 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 AP003119.3-201ENST00000566747 4192 ntBASIC6.63□□□□□ -1.35
MSX1P28360 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
MSX1P28360 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 RNU6-289P-201ENST00000364093 107 ntBASIC6.63□□□□□ -1.35
MSX1P28360 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
MSX1P28360 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 RNA5SP177-201ENST00000410122 107 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC017035.1-201ENST00000411999 1115 ntBASIC6.63□□□□□ -1.35
MSX1P28360 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX1P28360 CYP4F34P-201ENST00000425951 481 ntBASIC6.63□□□□□ -1.35
MSX1P28360 RPS7P14-201ENST00000426405 583 ntBASIC6.63□□□□□ -1.35
MSX1P28360 CDY7P-201ENST00000429883 1604 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX1P28360 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC6.63□□□□□ -1.35
MSX1P28360 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 AC104698.1-201ENST00000435671 276 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC092106.2-201ENST00000436597 487 ntBASIC6.63□□□□□ -1.35
MSX1P28360 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 RPS10P14-201ENST00000440748 502 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC092601.1-201ENST00000444526 383 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC012512.1-201ENST00000446594 718 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX1P28360 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 PSPC1P2-201ENST00000455130 225 ntBASIC6.63□□□□□ -1.35
MSX1P28360 PPP1R2P5-201ENST00000457256 603 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 RPSAP24-201ENST00000461543 873 ntBASIC6.63□□□□□ -1.35
MSX1P28360 MTND4P17-201ENST00000470444 350 ntBASIC6.63□□□□□ -1.35
MSX1P28360 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC6.63□□□□□ -1.35
MSX1P28360 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 NUP58P1-201ENST00000502546 1738 ntBASIC6.63□□□□□ -1.35
MSX1P28360 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX1P28360 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 NPM1P41-201ENST00000512920 831 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX1P28360 RPS20-202ENST00000518875 671 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 HIGD1AP6-201ENST00000521833 279 ntBASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms