Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.88□□□□□ -1.63
SMIM28A0A1B0GU29 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMIM28A0A1B0GU29 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 LINC00622-201ENST00000562811 1570 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AP005435.3-201ENST00000531260 3198 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AC020633.1-201ENST00000468439 2247 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 RNU1-130P-201ENST00000363930 160 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 RNA5SP509-201ENST00000364577 119 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AC068538.1-201ENST00000376856 336 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AL589994.1-201ENST00000404962 340 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 RNU4-25P-201ENST00000410569 230 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 RPS26P4-201ENST00000431743 355 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AC091390.1-201ENST00000433904 331 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 RPL23AP24-201ENST00000458203 385 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 NPM1P28-201ENST00000492269 840 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AC015795.1-201ENST00000513669 327 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 AP001160.4-201ENST00000596971 382 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 NAMPTP1-201ENST00000440465 2514 ntBASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SMIM28A0A1B0GU29 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 GAPDHP49-201ENST00000421421 961 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 FHP1-201ENST00000442741 703 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC053481.1-201ENST00000467217 306 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 RN7SL385P-201ENST00000468873 276 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 RPS27AP16-201ENST00000492222 470 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC113398.2-201ENST00000507630 558 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC093840.1-201ENST00000511599 336 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC010476.1-201ENST00000519111 851 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 MIR4697-201ENST00000582977 78 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC020634.1-201ENST00000608701 549 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AL121890.3-201ENST00000618494 516 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC011944.2-201ENST00000624440 683 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 CCT8P1-201ENST00000413611 1657 ntBASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.86□□□□□ -1.63
SMIM28A0A1B0GU29 AP000542.2-201ENST00000623199 6179 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC117434.1-201ENST00000419971 836 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 NPM1P26-201ENST00000426339 738 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 RPS29P17-201ENST00000430795 166 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC012671.1-201ENST00000451912 203 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AP002371.1-201ENST00000463604 433 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC069304.1-201ENST00000491593 704 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 RN7SL810P-201ENST00000493031 276 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AP000926.3-201ENST00000497201 299 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AK4P6-201ENST00000505168 528 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC108043.1-201ENST00000512696 574 ntBASIC4.85□□□□□ -1.63
SMIM28A0A1B0GU29 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms