Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RPS10P21-201ENST00000430654 475 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 IFNA20P-201ENST00000436840 528 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 Z80107.2-201ENST00000445127 392 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AL645937.3-201ENST00000453647 936 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 RPL29P23-201ENST00000486188 442 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 RN7SL153P-201ENST00000486501 292 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 TMEM251P1-201ENST00000503717 318 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 RN7SKP233-201ENST00000517005 110 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 MIR3167-201ENST00000579623 85 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 MIR4271-201ENST00000582451 67 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AL390877.1-201ENST00000605704 214 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC009237.17-201ENST00000618111 748 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AL161420.1-201ENST00000619393 264 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC008626.2-201ENST00000624425 248 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 USP9YP4-201ENST00000424401 1745 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 NUP58P1-201ENST00000502546 1738 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 AC006116.1-201ENST00000587908 2171 ntBASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC7.51□□□□□ -1.21
LIMD1Q9UGP4 ZNF121-201ENST00000320451 1563 ntAPPRIS P1 TSL 3 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 SELE-204ENST00000367776 3576 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 SELE-205ENST00000367777 3576 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 NACAP2-201ENST00000318548 624 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RN7SKP250-201ENST00000363924 321 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 Y_RNA.387-201ENST00000383918 102 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RNU6-1160P-201ENST00000384546 104 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AL353133.1-201ENST00000407695 401 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RPSAP60-201ENST00000415403 880 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 PTPN2P1-201ENST00000423212 1072 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 SETP9-201ENST00000423837 832 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 TRAPPC2P8-201ENST00000440676 396 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RPS10P18-201ENST00000442662 495 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 FAM103A2P-201ENST00000444122 354 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 EEF1B2P3-201ENST00000447718 678 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RPS18P1-201ENST00000447840 458 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 BX842559.2-201ENST00000451418 605 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 GAPDHP53-201ENST00000458397 924 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RN7SL393P-201ENST00000463588 296 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RPL12P40-201ENST00000467028 488 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AP001025.2-201ENST00000490908 477 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 RNU6-202P-201ENST00000515998 96 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 IGLVVII-41-1-201ENST00000518405 151 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 TRMT10BP1-201ENST00000519377 943 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC093249.1-201ENST00000567049 203 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 MIR212-201ENST00000586026 110 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC022743.1-201ENST00000624990 664 ntBASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC7.5□□□□□ -1.21
LIMD1Q9UGP4 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms