Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC009127.1-201ENST00000467090 155 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 SNORA31.13-201ENST00000516624 135 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC092490.3-201ENST00000545370 572 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 HMGB3P26-201ENST00000560051 582 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC006116.3-201ENST00000592968 361 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AC093765.1-201ENST00000603758 881 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 RPSAP73-201ENST00000614820 330 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 MIR7155-201ENST00000615925 56 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AP006248.2-201ENST00000623309 592 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AP002799.1-201ENST00000623552 423 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AP000843.1-201ENST00000624880 701 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 TCP1P3-201ENST00000414406 1498 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 AL353743.4-201ENST00000422653 1547 ntBASIC6.71□□□□□ -1.34
CHMP4AQ9BY43 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AL049737.1-201ENST00000413920 1403 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RN7SKP145-201ENST00000363291 303 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 SNORA70.6-201ENST00000383934 134 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 HSPD1P16-201ENST00000402302 394 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 TATDN1P1-201ENST00000414123 891 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 TRAPPC2P9-201ENST00000434556 343 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC092447.2-201ENST00000435487 669 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AL935212.3-201ENST00000450729 284 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC110749.1-201ENST00000462007 357 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RPS18P6-201ENST00000476880 458 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RPSAP50-201ENST00000481955 852 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RPL7P41-201ENST00000485823 957 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 IGKV2-36-201ENST00000519999 223 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 VTA1P2-201ENST00000520205 911 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC011374.2-201ENST00000607135 526 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 RNA5SP439-201ENST00000617595 124 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC118658.2-201ENST00000618697 459 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 AC068870.2-201ENST00000620635 389 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 LDHAL6CP-202ENST00000550738 3224 ntBASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CHMP4AQ9BY43 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RPL23P2-201ENST00000320371 421 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RN7SKP113-201ENST00000363891 295 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RPS27AP6-201ENST00000427962 448 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC009238.2-201ENST00000431026 355 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC090804.1-201ENST00000448870 490 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RPL23AP23-201ENST00000452590 471 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RN7SL329P-201ENST00000467740 299 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC004815.1-201ENST00000484185 331 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RNU6-513P-201ENST00000516104 104 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 RN7SKP66-201ENST00000516681 231 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 TBCA-203ENST00000517679 545 ntTSL 3 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC115085.1-201ENST00000588924 229 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AL645927.2-201ENST00000618350 349 ntBASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms