Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNA5SP319-201ENST00000362768 119 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 RNA5SP211-201ENST00000365516 117 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC009804.1-201ENST00000400949 179 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC124944.2-201ENST00000429866 1242 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 ARL5AP3-201ENST00000439327 386 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 MTND5P2-201ENST00000442927 1142 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.83□□□□□ -1.48
USP39Q53GS9 SDC4P-201ENST00000453285 601 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC011225.1-201ENST00000457751 369 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5.83□□□□□ -1.48
USP39Q53GS9 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC100832.1-201ENST00000471945 383 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 TRBV8-1-201ENST00000481590 279 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC026414.1-201ENST00000504046 698 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 LTV1P1-201ENST00000510683 1237 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC093770.1-201ENST00000511559 571 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 RN7SKP34-201ENST00000516142 244 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC021678.3-201ENST00000517893 476 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC5.83□□□□□ -1.48
USP39Q53GS9 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC5.83□□□□□ -1.48
USP39Q53GS9 MRPS16P1-201ENST00000523462 412 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 IGLV3-30-201ENST00000524362 298 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 HAUS8P1-201ENST00000549005 542 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 MTND4LP24-201ENST00000572277 291 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 MIR4700-201ENST00000578311 74 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.83□□□□□ -1.48
USP39Q53GS9 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AC125494.3-201ENST00000602759 455 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AP003973.1-201ENST00000604639 691 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AL353621.2-201ENST00000605340 133 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC016727.1-205ENST00000605437 569 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.83□□□□□ -1.48
USP39Q53GS9 AP000255.1-201ENST00000610276 676 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC024257.5-201ENST00000612739 531 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 MIR7155-201ENST00000615925 56 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 MIR8080-201ENST00000622224 89 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AL356266.1-201ENST00000623311 483 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 AC092656.1-203ENST00000624134 423 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 CASC19-281ENST00000642118 1554 ntBASIC5.83□□□□□ -1.48
USP39Q53GS9 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.83□□□□□ -1.48
USP39Q53GS9 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP39Q53GS9 SRRM1P3-201ENST00000426911 2678 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC068870.3-201ENST00000625077 2536 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.82□□□□□ -1.48
USP39Q53GS9 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.82□□□□□ -1.48
USP39Q53GS9 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
USP39Q53GS9 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 RNU5B-1-201ENST00000363286 116 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 OR13C3-201ENST00000374781 1108 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 MIR223-201ENST00000385204 110 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 OR2W4P-201ENST00000406496 926 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC019178.2-201ENST00000423595 505 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC021876.1-201ENST00000425959 359 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 RPS3AP38-201ENST00000435889 763 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 EEF1A1P39-201ENST00000440791 250 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC097262.1-201ENST00000452559 548 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 SEPT7P3-201ENST00000455017 621 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC008280.2-201ENST00000455473 307 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 snoU13.29-201ENST00000459370 104 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AL157777.1-201ENST00000468100 304 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 RPL35AP19-201ENST00000469425 329 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 RN7SL583P-201ENST00000475692 287 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.82□□□□□ -1.48
USP39Q53GS9 RPL21P47-201ENST00000483696 477 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC004815.1-201ENST00000484185 331 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms