Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA3P55318 AC011487.3-201ENST00000593607 453 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC090948.2-201ENST00000607363 564 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC009779.8-202ENST00000607990 932 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC020634.1-201ENST00000608701 549 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC007497.1-201ENST00000610421 561 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.45□□□□□ -1.86
FOXA3P55318 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA3P55318 AC007204.2-201ENST00000615022 616 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AL138721.1-201ENST00000616756 179 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AL359742.1-201ENST00000622497 540 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC091905.2-201ENST00000623143 306 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 LDHA-225ENST00000625635 141 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA3P55318 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
FOXA3P55318 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXA3P55318 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXA3P55318 Z73965.1-201ENST00000623412 2297 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 MIR365B-201ENST00000362317 111 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 SNORD74.4-201ENST00000364129 80 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 RNU6-1263P-201ENST00000384601 106 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 DUTP5-201ENST00000406790 469 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 BMS1P13-201ENST00000417301 885 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 AL163193.1-201ENST00000444895 788 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AC099063.2-201ENST00000446360 662 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.44□□□□□ -1.86
FOXA3P55318 RPL23AP56-201ENST00000460778 453 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 RN7SL168P-201ENST00000463821 279 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AC090142.1-201ENST00000465776 462 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 RPS4XP1-201ENST00000482189 787 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 HMGN2P25-201ENST00000486956 268 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 PGAM1P13-201ENST00000507497 754 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 snoU109.6-201ENST00000516831 118 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 KCTD9P6-201ENST00000522306 950 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 IFITM8P-201ENST00000522529 394 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC3.44□□□□□ -1.86
FOXA3P55318 RN7SL802P-201ENST00000577858 299 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA3P55318 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
FOXA3P55318 AC004948.1-201ENST00000609858 672 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AL159169.2-201ENST00000610061 1269 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 AL356121.2-201ENST00000624715 780 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 USP9YP4-201ENST00000424401 1745 ntBASIC3.44□□□□□ -1.86
FOXA3P55318 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA3P55318 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA3P55318 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.43□□□□□ -1.86
FOXA3P55318 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
FOXA3P55318 EEF1A1P36-201ENST00000427807 1351 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 AC011155.1-201ENST00000316512 456 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC3.43□□□□□ -1.86
FOXA3P55318 RN7SKP160-201ENST00000363804 340 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 RN7SKP187-201ENST00000365536 330 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
FOXA3P55318 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
FOXA3P55318 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 AL589647.1-201ENST00000402485 466 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 DNAJA1P4-201ENST00000406473 1166 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA3P55318 OR51B3P-201ENST00000412287 913 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 CDY17P-201ENST00000414121 1282 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA3P55318 NANOGP6-201ENST00000429190 847 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA3P55318 AC079807.1-201ENST00000429993 481 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA3P55318 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms