Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXA1P55317 RPL23AP43-201ENST00000446445 471 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA1P55317 DDX39BP2-208ENST00000453923 258 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 RPS3AP53-201ENST00000454716 778 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AC091685.2-201ENST00000454924 864 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 SEPT7P3-201ENST00000455017 621 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 RPS3AP41-201ENST00000462701 778 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
FOXA1P55317 SUMO2P4-201ENST00000504193 276 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
FOXA1P55317 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXA1P55317 SETP1-201ENST00000556014 845 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA1P55317 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXA1P55317 MIR4646-201ENST00000580775 63 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXA1P55317 AL133338.2-201ENST00000604292 736 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 Z98200.1-201ENST00000607298 470 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA1P55317 AC007546.2-201ENST00000623996 360 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.33□□□□□ -1.72
FOXA1P55317 AC055839.1-201ENST00000634467 498 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AL596275.2-204ENST00000641628 552 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AL596275.2-206ENST00000641957 626 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.33□□□□□ -1.72
FOXA1P55317 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
FOXA1P55317 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.33□□□□□ -1.72
FOXA1P55317 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
FOXA1P55317 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.33□□□□□ -1.72
FOXA1P55317 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
FOXA1P55317 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.33□□□□□ -1.72
FOXA1P55317 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA1P55317 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA1P55317 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
FOXA1P55317 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
FOXA1P55317 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA1P55317 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
FOXA1P55317 RNU6-249P-201ENST00000363016 102 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 SNORA71.2-201ENST00000364941 134 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
FOXA1P55317 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
FOXA1P55317 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA1P55317 AC002524.1-201ENST00000411687 547 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 ARAFP1-201ENST00000422172 605 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 RPS12P10-201ENST00000427031 377 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AC104837.2-201ENST00000427236 424 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA1P55317 RPL7P61-201ENST00000451721 751 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AC012671.1-201ENST00000451912 203 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 SBDSP1-204ENST00000453858 737 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 HIGD1AP8-201ENST00000453927 274 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.32□□□□□ -1.72
FOXA1P55317 AC079804.1-201ENST00000461922 436 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AC022795.1-201ENST00000473808 480 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 RPL12P20-201ENST00000475538 479 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.32□□□□□ -1.72
FOXA1P55317 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AC134698.5-201ENST00000519444 336 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 RPL23AP97-201ENST00000568955 471 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AC091042.1-201ENST00000579213 173 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA1P55317 AC020634.1-201ENST00000608701 549 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 AL669942.2-201ENST00000620352 697 ntBASIC4.32□□□□□ -1.72
FOXA1P55317 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.32□□□□□ -1.72
FOXA1P55317 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.32□□□□□ -1.72
FOXA1P55317 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA1P55317 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA1P55317 XKRY2-202ENST00000623874 1581 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 XKRY-202ENST00000624960 1581 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 MAPK10-320ENST00000641462 6696 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.31□□□□□ -1.72
FOXA1P55317 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 SCN1A-220ENST00000641603 12506 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
FOXA1P55317 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 RNU1-94P-201ENST00000362627 173 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 SNORA58B-201ENST00000364259 136 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
FOXA1P55317 RN7SKP216-201ENST00000411050 312 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 SNORA74C-2-201ENST00000411179 201 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA1P55317 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.31□□□□□ -1.72
FOXA1P55317 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.31□□□□□ -1.72
FOXA1P55317 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.31□□□□□ -1.72
FOXA1P55317 AL049745.1-201ENST00000433953 286 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms