Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CALM1P2-201ENST00000452941 448 ntBASIC5.57□□□□□ -1.52
MSX2P35548 RPL5P32-201ENST00000454085 879 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 SUMO2P2-201ENST00000456482 255 ntBASIC5.57□□□□□ -1.52
MSX2P35548 CDC42P1-201ENST00000456658 548 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC004129.2-201ENST00000457229 287 ntBASIC5.57□□□□□ -1.52
MSX2P35548 RN7SL39P-201ENST00000462264 297 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC005165.2-201ENST00000466070 380 ntBASIC5.57□□□□□ -1.52
MSX2P35548 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 AC091959.2-201ENST00000477363 321 ntBASIC5.57□□□□□ -1.52
MSX2P35548 GAPDHP36-201ENST00000480688 918 ntBASIC5.57□□□□□ -1.52
MSX2P35548 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.57□□□□□ -1.52
MSX2P35548 OR7E99P-201ENST00000505750 922 ntBASIC5.57□□□□□ -1.52
MSX2P35548 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 GAPDHP62-201ENST00000515313 990 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC109635.6-201ENST00000525487 1113 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 AL139174.1-201ENST00000531489 886 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC006530.1-201ENST00000555980 571 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 RN7SL66P-201ENST00000582099 264 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 AC026898.1-201ENST00000586404 571 ntBASIC5.57□□□□□ -1.52
MSX2P35548 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC5.57□□□□□ -1.52
MSX2P35548 IGKV2OR2-7-201ENST00000604652 304 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC018618.2-201ENST00000604770 446 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.57□□□□□ -1.52
MSX2P35548 SNORA74.4-201ENST00000607595 199 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AC017083.3-201ENST00000609955 700 ntBASIC5.57□□□□□ -1.52
MSX2P35548 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.57□□□□□ -1.52
MSX2P35548 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
MSX2P35548 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 AC020633.1-201ENST00000468439 2247 ntBASIC5.57□□□□□ -1.52
MSX2P35548 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 PSG10P-201ENST00000501199 1500 ntBASIC5.57□□□□□ -1.52
MSX2P35548 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX2P35548 SPATA2P1-201ENST00000431223 2055 ntBASIC5.57□□□□□ -1.52
MSX2P35548 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
MSX2P35548 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.57□□□□□ -1.52
MSX2P35548 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX2P35548 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
MSX2P35548 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX2P35548 OR9K1P-202ENST00000641111 3217 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX2P35548 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX2P35548 RPL11P4-201ENST00000332269 436 ntBASIC5.56□□□□□ -1.52
MSX2P35548 RNU6-560P-201ENST00000364007 108 ntBASIC5.56□□□□□ -1.52
MSX2P35548 Y_RNA.359-201ENST00000365498 102 ntBASIC5.56□□□□□ -1.52
MSX2P35548 RNA5SP211-201ENST00000365516 117 ntBASIC5.56□□□□□ -1.52
MSX2P35548 SNORA70.6-201ENST00000383934 134 ntBASIC5.56□□□□□ -1.52
MSX2P35548 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 LINC01347-201ENST00000417964 355 ntBASIC5.56□□□□□ -1.52
MSX2P35548 RPA2P2-201ENST00000419698 796 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 NDUFS5P5-201ENST00000437256 321 ntBASIC5.56□□□□□ -1.52
MSX2P35548 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 AC010240.2-201ENST00000445363 1205 ntBASIC5.56□□□□□ -1.52
MSX2P35548 CDC27P1-201ENST00000445384 715 ntBASIC5.56□□□□□ -1.52
MSX2P35548 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 AC016027.4-201ENST00000450866 277 ntBASIC5.56□□□□□ -1.52
MSX2P35548 RPL21P134-201ENST00000453468 483 ntBASIC5.56□□□□□ -1.52
MSX2P35548 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC104164.1-201ENST00000460282 590 ntBASIC5.56□□□□□ -1.52
MSX2P35548 ABCC13-202ENST00000463099 3842 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 RN7SL790P-201ENST00000474043 298 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC044810.1-201ENST00000480271 711 ntBASIC5.56□□□□□ -1.52
MSX2P35548 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms