Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.97□□□□□ -1.61
CDH3P22223 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CDH3P22223 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 THAP12P4-201ENST00000528321 2266 ntBASIC4.97□□□□□ -1.61
CDH3P22223 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 AC131971.1-201ENST00000332881 1482 ntBASIC4.97□□□□□ -1.61
CDH3P22223 SNURFL-201ENST00000309296 343 ntBASIC4.97□□□□□ -1.61
CDH3P22223 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.97□□□□□ -1.61
CDH3P22223 RNA5SP455-201ENST00000365190 119 ntBASIC4.97□□□□□ -1.61
CDH3P22223 SNORA48.4-201ENST00000391089 134 ntBASIC4.97□□□□□ -1.61
CDH3P22223 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 DDX39BP1-205ENST00000422507 192 ntBASIC4.97□□□□□ -1.61
CDH3P22223 MTND4LP13-201ENST00000425022 298 ntBASIC4.97□□□□□ -1.61
CDH3P22223 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.97□□□□□ -1.61
CDH3P22223 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.97□□□□□ -1.61
CDH3P22223 AC074367.1-201ENST00000438685 1125 ntBASIC4.97□□□□□ -1.61
CDH3P22223 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.97□□□□□ -1.61
CDH3P22223 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.97□□□□□ -1.61
CDH3P22223 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.97□□□□□ -1.61
CDH3P22223 AL031584.1-201ENST00000447169 754 ntBASIC4.97□□□□□ -1.61
CDH3P22223 NOP56P2-201ENST00000447491 769 ntBASIC4.97□□□□□ -1.61
CDH3P22223 AL645937.3-201ENST00000453647 936 ntBASIC4.97□□□□□ -1.61
CDH3P22223 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.97□□□□□ -1.61
CDH3P22223 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.97□□□□□ -1.61
CDH3P22223 RN7SL826P-201ENST00000479724 288 ntBASIC4.97□□□□□ -1.61
CDH3P22223 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.97□□□□□ -1.61
CDH3P22223 MTND3P24-201ENST00000506306 329 ntBASIC4.97□□□□□ -1.61
CDH3P22223 HMGB3P16-201ENST00000508037 287 ntBASIC4.97□□□□□ -1.61
CDH3P22223 HMGB1P47-201ENST00000511281 589 ntBASIC4.97□□□□□ -1.61
CDH3P22223 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.97□□□□□ -1.61
CDH3P22223 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
CDH3P22223 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.97□□□□□ -1.61
CDH3P22223 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.97□□□□□ -1.61
CDH3P22223 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.97□□□□□ -1.61
CDH3P22223 MIR4646-201ENST00000580775 63 ntBASIC4.97□□□□□ -1.61
CDH3P22223 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.97□□□□□ -1.61
CDH3P22223 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.97□□□□□ -1.61
CDH3P22223 ASNSP1-201ENST00000518311 1939 ntBASIC4.97□□□□□ -1.61
CDH3P22223 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CDH3P22223 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.97□□□□□ -1.61
CDH3P22223 AL121950.1-201ENST00000624993 2077 ntBASIC4.96□□□□□ -1.61
CDH3P22223 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
CDH3P22223 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.96□□□□□ -1.61
CDH3P22223 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
CDH3P22223 LINC01109-201ENST00000603837 3081 ntBASIC4.96□□□□□ -1.61
CDH3P22223 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
CDH3P22223 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.96□□□□□ -1.61
CDH3P22223 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
CDH3P22223 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CDH3P22223 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
CDH3P22223 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CDH3P22223 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.96□□□□□ -1.62
CDH3P22223 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CDH3P22223 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CDH3P22223 AC019155.1-201ENST00000382242 574 ntBASIC4.96□□□□□ -1.62
CDH3P22223 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CDH3P22223 AC013442.1-201ENST00000397347 228 ntBASIC4.96□□□□□ -1.62
CDH3P22223 CHMP1B2P-201ENST00000399581 597 ntBASIC4.96□□□□□ -1.62
CDH3P22223 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.96□□□□□ -1.62
CDH3P22223 GLUD1P9-201ENST00000420997 1173 ntBASIC4.96□□□□□ -1.62
CDH3P22223 RBMY2QP-201ENST00000429799 1147 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AC007563.3-201ENST00000433233 371 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.96□□□□□ -1.62
CDH3P22223 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.96□□□□□ -1.62
CDH3P22223 RPL12P3-201ENST00000440080 396 ntBASIC4.96□□□□□ -1.62
CDH3P22223 XKRY2-201ENST00000442362 1093 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.96□□□□□ -1.62
CDH3P22223 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.96□□□□□ -1.62
CDH3P22223 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC4.96□□□□□ -1.62
CDH3P22223 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.96□□□□□ -1.62
CDH3P22223 snoU13.20-201ENST00000459180 104 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AC104629.2-201ENST00000468627 598 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AC037198.2-201ENST00000478845 733 ntBASIC4.96□□□□□ -1.62
CDH3P22223 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.96□□□□□ -1.62
CDH3P22223 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.96□□□□□ -1.62
CDH3P22223 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CDH3P22223 AC008628.1-201ENST00000508663 265 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AC025768.1-201ENST00000510057 267 ntBASIC4.96□□□□□ -1.62
CDH3P22223 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.96□□□□□ -1.62
CDH3P22223 RN7SKP46-201ENST00000515942 234 ntBASIC4.96□□□□□ -1.62
CDH3P22223 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.96□□□□□ -1.62
CDH3P22223 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.96□□□□□ -1.62
CDH3P22223 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.96□□□□□ -1.62
CDH3P22223 OR8X1P-201ENST00000534542 869 ntBASIC4.96□□□□□ -1.62
CDH3P22223 CKS1BP1-201ENST00000555221 240 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.96□□□□□ -1.62
CDH3P22223 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.96□□□□□ -1.62
CDH3P22223 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.96□□□□□ -1.62
CDH3P22223 MTND4LP25-201ENST00000570218 163 ntBASIC4.96□□□□□ -1.62
CDH3P22223 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.96□□□□□ -1.62
CDH3P22223 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.96□□□□□ -1.62
CDH3P22223 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms