Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHOX2O60902 SETP10-201ENST00000424368 814 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC006455.6-201ENST00000426192 893 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHOX2O60902 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.69□□□□□ -1.66
SHOX2O60902 KNOP1P3-201ENST00000446933 426 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.69□□□□□ -1.66
SHOX2O60902 CEACAMP10-202ENST00000495431 496 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.69□□□□□ -1.66
SHOX2O60902 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHOX2O60902 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.69□□□□□ -1.66
SHOX2O60902 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AF186190.1-201ENST00000517470 480 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.69□□□□□ -1.66
SHOX2O60902 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.69□□□□□ -1.66
SHOX2O60902 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.69□□□□□ -1.66
SHOX2O60902 AC069307.1-201ENST00000602820 447 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC104785.1-201ENST00000603220 588 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC105254.2-201ENST00000603636 436 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.69□□□□□ -1.66
SHOX2O60902 AC073575.2-201ENST00000614212 627 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.69□□□□□ -1.66
SHOX2O60902 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.69□□□□□ -1.66
SHOX2O60902 WBP1LP8-201ENST00000617401 327 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC090527.3-201ENST00000619041 548 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC011815.3-201ENST00000624194 473 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 AC136428.4-201ENST00000634254 1155 ntBASIC4.69□□□□□ -1.66
SHOX2O60902 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHOX2O60902 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.69□□□□□ -1.66
SHOX2O60902 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHOX2O60902 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SHOX2O60902 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.69□□□□□ -1.66
SHOX2O60902 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHOX2O60902 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHOX2O60902 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHOX2O60902 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHOX2O60902 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
SHOX2O60902 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHOX2O60902 RNA5SP502-201ENST00000362694 119 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 RNA5SP428-201ENST00000365129 132 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHOX2O60902 MIR137-201ENST00000385223 102 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 MIR708-201ENST00000390708 88 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AL590762.2-201ENST00000395798 571 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AL391422.1-201ENST00000402155 436 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHOX2O60902 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 RAB28P1-201ENST00000411517 641 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 AL645608.4-201ENST00000423619 154 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AC093655.2-201ENST00000425735 631 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 OR7E125P-201ENST00000443450 846 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 HMGB3P22-202ENST00000451823 572 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.68□□□□□ -1.66
SHOX2O60902 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 SYT14P1-201ENST00000481459 721 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 RN7SL184P-201ENST00000488308 297 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 RN7SL466P-201ENST00000497546 295 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 UBTFL9-201ENST00000534504 1148 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.68□□□□□ -1.66
SHOX2O60902 AC107016.1-201ENST00000550463 337 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.68□□□□□ -1.66
SHOX2O60902 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHOX2O60902 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.68□□□□□ -1.66
SHOX2O60902 TVP23CP2-201ENST00000571473 623 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC4.68□□□□□ -1.66
SHOX2O60902 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SHOX2O60902 AC023762.1-201ENST00000603280 584 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AL121932.1-201ENST00000605542 214 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AC007204.2-201ENST00000615022 616 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AC233309.1-201ENST00000619522 751 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 AL359715.5-201ENST00000623431 443 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.68□□□□□ -1.66
SHOX2O60902 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
SHOX2O60902 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.68□□□□□ -1.66
SHOX2O60902 CR382285.2-201ENST00000624662 1495 ntBASIC4.68□□□□□ -1.66
SHOX2O60902 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.67□□□□□ -1.66
SHOX2O60902 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms