Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AC114755.2-201ENST00000413520 361 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 NCLP2-201ENST00000416078 1462 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 GAPDHP56-201ENST00000506031 988 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AC134698.5-201ENST00000519444 336 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 BUD31P1-201ENST00000521828 359 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AC021006.3-201ENST00000530771 192 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AC209154.1-201ENST00000582156 337 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 AL136164.3-201ENST00000624429 3978 ntBASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
UPF3BQ9BZI7 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AL442639.1-201ENST00000625030 1899 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RPL32P3-201ENST00000359025 275 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RNU6-249P-201ENST00000363016 102 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RNU4-44P-201ENST00000363050 141 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 TRAV35-201ENST00000390462 330 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC004074.1-201ENST00000421810 1063 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RPS26P2-201ENST00000440331 348 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC239367.2-201ENST00000447309 705 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AL513533.1-201ENST00000453728 415 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC103987.1-201ENST00000473394 348 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC104971.1-201ENST00000495117 578 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RNA5SP464-201ENST00000516251 108 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC068790.4-201ENST00000602474 263 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC073137.1-201ENST00000605636 634 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 COX6CP4-201ENST00000605798 228 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC019193.2-201ENST00000610012 634 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC006338.2-201ENST00000616864 791 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC087385.3-201ENST00000620477 187 ntBASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.6□□□□□ -1.51
UPF3BQ9BZI7 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 RN7SKP227-201ENST00000364445 330 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 AC019050.1-201ENST00000418508 492 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 AC104651.2-201ENST00000447549 528 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 OR52J1P-201ENST00000450596 932 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 AC034205.1-201ENST00000520621 638 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 BNIP3P5-201ENST00000562290 498 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 MIR1254-2-201ENST00000579553 63 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 BNIP3P33-201ENST00000598912 569 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 MIR6780A-201ENST00000615089 68 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 MIR6758-201ENST00000620653 63 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 AC005086.4-201ENST00000623065 213 ntBASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
UPF3BQ9BZI7 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
UPF3BQ9BZI7 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
UPF3BQ9BZI7 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.58□□□□□ -1.52
UPF3BQ9BZI7 AL031119.1-201ENST00000404707 1879 ntBASIC5.58□□□□□ -1.52
UPF3BQ9BZI7 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.58□□□□□ -1.52
UPF3BQ9BZI7 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.58□□□□□ -1.52
UPF3BQ9BZI7 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
UPF3BQ9BZI7 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
UPF3BQ9BZI7 AC079741.1-201ENST00000321498 212 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms