Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 RNA5SP510-201ENST00000364697 99 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 SNORA70-201ENST00000384436 135 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AL357515.1-201ENST00000402967 542 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AL080315.1-201ENST00000406055 466 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 RNA5SP345-201ENST00000410646 108 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 USP9YP19-201ENST00000412165 485 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC004552.1-201ENST00000419089 348 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 IPPKP1-201ENST00000422501 768 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 DDX39BP1-205ENST00000422507 192 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AL590623.1-201ENST00000427864 105 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 RPL7L1P9-201ENST00000431298 745 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC073109.1-201ENST00000445066 978 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 PSMC1P13-201ENST00000458195 985 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC094085.1-201ENST00000468914 584 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 RPS26P3-201ENST00000470205 348 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC090543.2-201ENST00000483963 348 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC004057.1-201ENST00000485827 348 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 RN7SL97P-201ENST00000486780 299 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 RN7SL214P-201ENST00000487317 265 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC100770.1-201ENST00000532310 322 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 FAM60CP-201ENST00000591086 664 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC015802.5-201ENST00000607478 399 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC020763.5-201ENST00000623298 430 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AP003400.6-201ENST00000624698 740 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 ARL4AP5-201ENST00000404372 599 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 RN7SKP293-201ENST00000411389 296 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 C1DP3-201ENST00000455013 423 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC107015.1-201ENST00000466902 747 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 NDUFA5P5-201ENST00000468361 342 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC097484.1-201ENST00000471148 389 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC108022.1-201ENST00000493466 478 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC104997.1-201ENST00000519761 717 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC024405.1-201ENST00000532521 1042 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 MTND2P17-201ENST00000550281 688 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 FKBP1BP1-201ENST00000553366 325 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 MIR5010-201ENST00000582846 120 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC068790.5-201ENST00000602741 355 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC020634.1-201ENST00000608701 549 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC009704.2-201ENST00000618739 483 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC099494.2-201ENST00000623371 978 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC020923.1-201ENST00000624021 917 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AP000720.1-201ENST00000625091 483 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC136428.4-201ENST00000634254 1155 ntBASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC28BQ9BUN5 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms