Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP4CQ96CF2 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.4□□□□□ -1.38
CHMP4CQ96CF2 CASC19-264ENST00000641912 1184 ntBASIC6.4□□□□□ -1.38
CHMP4CQ96CF2 AP001029.2-203ENST00000589795 4910 ntBASIC6.4□□□□□ -1.38
CHMP4CQ96CF2 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CHMP4CQ96CF2 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
CHMP4CQ96CF2 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
CHMP4CQ96CF2 VN2R3P-201ENST00000422626 1412 ntBASIC6.4□□□□□ -1.39
CHMP4CQ96CF2 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.4□□□□□ -1.39
CHMP4CQ96CF2 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.4□□□□□ -1.39
CHMP4CQ96CF2 VPS35P1-201ENST00000563400 1518 ntBASIC6.4□□□□□ -1.39
CHMP4CQ96CF2 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
CHMP4CQ96CF2 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 PABPC1P6-201ENST00000445594 1829 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC026523.2-201ENST00000625039 7739 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 U6.112-201ENST00000384129 70 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 MIR320B1-201ENST00000390209 79 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 ZNF602P-201ENST00000405929 924 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RPS3AP25-201ENST00000411660 793 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 ZNF736P7Y-201ENST00000425158 820 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC245047.2-201ENST00000441060 530 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 DNAJB5P1-201ENST00000454004 806 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RPS4XP6-201ENST00000477670 797 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RPS27AP16-201ENST00000492222 470 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RN7SL808P-201ENST00000496066 299 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC072052.1-201ENST00000496556 306 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RPSAP51-201ENST00000497462 645 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC008638.1-201ENST00000506035 866 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 SNORA19.3-201ENST00000516165 130 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RNU6-941P-201ENST00000516346 108 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 SCARNA16.4-201ENST00000516956 187 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 OR8G3P-201ENST00000533406 921 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC126177.5-201ENST00000549599 178 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RN7SL622P-201ENST00000585292 275 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC013244.3-201ENST00000605614 388 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC073569.3-201ENST00000619055 682 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 CYP4F35P-202ENST00000636121 390 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC017007.4-201ENST00000503353 1352 ntBASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
CHMP4CQ96CF2 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 RPL23P2-201ENST00000320371 421 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 RNU5B-1-201ENST00000363286 116 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 RNA5SP27-201ENST00000363839 119 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AP000534.2-201ENST00000412729 568 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 SRSF1P1-201ENST00000424058 520 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 CYCSP11-201ENST00000436426 315 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 RPL5P25-201ENST00000441148 775 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AL353093.1-201ENST00000441292 436 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 COPS8P2-201ENST00000473228 627 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 HMGB1P44-201ENST00000508597 572 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AC034205.1-201ENST00000520621 638 ntBASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.38□□□□□ -1.39
CHMP4CQ96CF2 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms