Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC021205.1-201ENST00000468797 348 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 RPL7P16-201ENST00000479738 738 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 RPL23AP72-201ENST00000492447 435 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 RNU6-513P-201ENST00000516104 104 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 LSM3P2-201ENST00000551246 273 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 MIR4284-201ENST00000578924 81 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC011487.3-201ENST00000593607 453 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AL049844.2-201ENST00000604280 628 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AL451049.1-201ENST00000608672 497 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AP005229.2-201ENST00000609980 697 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC021106.3-201ENST00000623925 531 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC097461.1-201ENST00000568928 2821 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.15□□□□□ -1.58
COL28A1Q2UY09 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL28A1Q2UY09 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.15□□□□□ -1.58
COL28A1Q2UY09 AC068870.3-201ENST00000625077 2536 ntBASIC5.15□□□□□ -1.58
COL28A1Q2UY09 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL28A1Q2UY09 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 RN7SKP149-201ENST00000363008 344 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 MIR551A-201ENST00000385042 96 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 SNORA48.7-201ENST00000391302 135 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 SNORA11C-201ENST00000408532 129 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC096921.1-201ENST00000411661 375 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC093655.2-201ENST00000425735 631 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC069540.1-201ENST00000446320 988 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC010374.2-201ENST00000512933 535 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 OR7H2P-201ENST00000513483 306 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 RNU6-1004P-201ENST00000516584 111 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 IGLV3-24-201ENST00000517477 197 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC034205.1-201ENST00000520621 638 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC137627.1-201ENST00000545761 289 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AGGF1P9-201ENST00000561884 913 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 MIR4311-201ENST00000580794 100 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC020910.2-201ENST00000603635 610 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC079610.2-201ENST00000604818 690 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC007275.1-201ENST00000621243 671 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AP003476.1-201ENST00000623984 516 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC024023.1-201ENST00000624530 922 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC073869.7-201ENST00000640874 297 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 MFSD8-213ENST00000641134 1327 ntBASIC5.15□□□□□ -1.59
COL28A1Q2UY09 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL28A1Q2UY09 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 161.5 ms