Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC7.5□□□□□ -1.21
CUX1P39880 AL136231.1-201ENST00000429407 730 ntBASIC7.5□□□□□ -1.21
CUX1P39880 AL117339.2-201ENST00000430475 180 ntBASIC7.5□□□□□ -1.21
CUX1P39880 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC7.5□□□□□ -1.21
CUX1P39880 AC114495.1-201ENST00000441274 436 ntBASIC7.5□□□□□ -1.21
CUX1P39880 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC7.5□□□□□ -1.21
CUX1P39880 EIF4A2P2-201ENST00000455776 1070 ntBASIC7.5□□□□□ -1.21
CUX1P39880 VN1R105P-201ENST00000486595 910 ntBASIC7.5□□□□□ -1.21
CUX1P39880 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC7.5□□□□□ -1.21
CUX1P39880 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC7.5□□□□□ -1.21
CUX1P39880 HNRNPCP4-201ENST00000571636 900 ntBASIC7.5□□□□□ -1.21
CUX1P39880 BPIFA4P-203ENST00000603168 689 ntBASIC7.5□□□□□ -1.21
CUX1P39880 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CUX1P39880 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CUX1P39880 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC7.5□□□□□ -1.21
CUX1P39880 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC7.5□□□□□ -1.21
CUX1P39880 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC7.49□□□□□ -1.21
CUX1P39880 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
CUX1P39880 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
CUX1P39880 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC7.49□□□□□ -1.21
CUX1P39880 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC7.49□□□□□ -1.21
CUX1P39880 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC7.49□□□□□ -1.21
CUX1P39880 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC7.49□□□□□ -1.21
CUX1P39880 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC7.49□□□□□ -1.21
CUX1P39880 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CUX1P39880 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC7.49□□□□□ -1.21
CUX1P39880 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC7.49□□□□□ -1.21
CUX1P39880 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC7.49□□□□□ -1.21
CUX1P39880 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CUX1P39880 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CUX1P39880 TRAV35-201ENST00000390462 330 ntBASIC7.48□□□□□ -1.21
CUX1P39880 AC009237.10-201ENST00000414112 510 ntBASIC7.48□□□□□ -1.21
CUX1P39880 Z74021.1-201ENST00000423610 407 ntBASIC7.48□□□□□ -1.21
CUX1P39880 RPL5P2-201ENST00000429598 854 ntBASIC7.48□□□□□ -1.21
CUX1P39880 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC7.48□□□□□ -1.21
CUX1P39880 AL133372.1-201ENST00000493565 745 ntBASIC7.48□□□□□ -1.21
CUX1P39880 PGBD4P4-201ENST00000509673 613 ntBASIC7.48□□□□□ -1.21
CUX1P39880 AC079587.1-201ENST00000603846 277 ntBASIC7.48□□□□□ -1.21
CUX1P39880 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC7.48□□□□□ -1.21
CUX1P39880 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CUX1P39880 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
CUX1P39880 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
CUX1P39880 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC7.48□□□□□ -1.21
CUX1P39880 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC7.48□□□□□ -1.21
CUX1P39880 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CUX1P39880 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
CUX1P39880 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
CUX1P39880 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC7.48□□□□□ -1.21
CUX1P39880 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC7.48□□□□□ -1.21
CUX1P39880 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CUX1P39880 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
CUX1P39880 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
CUX1P39880 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
CUX1P39880 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CUX1P39880 MIR3065-201ENST00000390137 79 ntBASIC7.47□□□□□ -1.21
CUX1P39880 AC097374.1-203ENST00000400783 485 ntBASIC7.47□□□□□ -1.21
CUX1P39880 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC7.47□□□□□ -1.21
CUX1P39880 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC7.47□□□□□ -1.21
CUX1P39880 RNA5SP49-201ENST00000516450 115 ntBASIC7.47□□□□□ -1.21
CUX1P39880 AC087477.6-201ENST00000559595 843 ntBASIC7.47□□□□□ -1.21
CUX1P39880 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC7.47□□□□□ -1.21
CUX1P39880 RNA5SP439-201ENST00000617595 124 ntBASIC7.47□□□□□ -1.21
CUX1P39880 AC015914.2-201ENST00000618167 288 ntBASIC7.47□□□□□ -1.21
CUX1P39880 LINC01808-202ENST00000641680 1116 ntBASIC7.47□□□□□ -1.21
CUX1P39880 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CUX1P39880 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
CUX1P39880 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC7.47□□□□□ -1.21
CUX1P39880 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
CUX1P39880 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC7.47□□□□□ -1.21
CUX1P39880 AL161912.2-201ENST00000565707 3007 ntBASIC7.47□□□□□ -1.21
CUX1P39880 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC7.47□□□□□ -1.21
CUX1P39880 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CUX1P39880 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CUX1P39880 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CUX1P39880 ATP5F1P3-201ENST00000397213 657 ntBASIC7.47□□□□□ -1.21
CUX1P39880 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC7.47□□□□□ -1.21
CUX1P39880 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC7.47□□□□□ -1.21
CUX1P39880 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC7.47□□□□□ -1.21
CUX1P39880 TMEM30CP-203ENST00000637814 1035 ntBASIC7.47□□□□□ -1.21
CUX1P39880 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC7.47□□□□□ -1.21
CUX1P39880 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC7.47□□□□□ -1.21
CUX1P39880 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC7.46□□□□□ -1.21
CUX1P39880 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
CUX1P39880 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC7.46□□□□□ -1.21
CUX1P39880 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CUX1P39880 DNM1P47-203ENST00000571780 12667 ntBASIC7.46□□□□□ -1.22
CUX1P39880 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC7.46□□□□□ -1.22
CUX1P39880 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
CUX1P39880 AC090220.1-201ENST00000593078 1699 ntBASIC7.46□□□□□ -1.22
CUX1P39880 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CUX1P39880 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CUX1P39880 SNORA71.3-201ENST00000362582 128 ntBASIC7.46□□□□□ -1.22
CUX1P39880 RNA5SP130-201ENST00000364431 114 ntBASIC7.46□□□□□ -1.22
CUX1P39880 AC104333.2-201ENST00000422630 192 ntBASIC7.46□□□□□ -1.22
CUX1P39880 AC006946.1-201ENST00000429106 328 ntBASIC7.46□□□□□ -1.22
CUX1P39880 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC7.46□□□□□ -1.22
CUX1P39880 AP001153.1-201ENST00000641024 338 ntBASIC7.46□□□□□ -1.22
CUX1P39880 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC7.46□□□□□ -1.22
CUX1P39880 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
CUX1P39880 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms