Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 Z82195.1-201ENST00000604558 398 ntBASIC5.63□□□□□ -1.51
DKK3Q9UBP4 AC012557.2-201ENST00000605919 418 ntBASIC5.63□□□□□ -1.51
DKK3Q9UBP4 AL008729.2-201ENST00000606393 473 ntBASIC5.63□□□□□ -1.51
DKK3Q9UBP4 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 AC078883.4-201ENST00000623218 367 ntBASIC5.63□□□□□ -1.51
DKK3Q9UBP4 AC139792.2-201ENST00000624218 587 ntBASIC5.63□□□□□ -1.51
DKK3Q9UBP4 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.63□□□□□ -1.51
DKK3Q9UBP4 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 OR9K1P-201ENST00000326513 941 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 SNORD116-8-201ENST00000384365 95 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 MIR551A-201ENST00000385042 96 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 CASP3-203ENST00000393588 677 ntTSL 4 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AL009179.1-201ENST00000406085 265 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 ZNF885P-201ENST00000420174 1098 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 EIF4A1P1-201ENST00000420241 934 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 OR6D1P-201ENST00000436165 939 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC012075.1-201ENST00000436549 580 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC019185.1-201ENST00000442718 389 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 ZNF886P-201ENST00000450781 723 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC116562.1-201ENST00000485355 781 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 RPL32P9-201ENST00000487963 407 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 Y_RNA.688-201ENST00000516565 95 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 ZNF971P-201ENST00000562068 1249 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 H3F3BP2-201ENST00000583907 357 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC012616.1-201ENST00000600294 197 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 Z94722.1-201ENST00000604328 474 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC010245.2-201ENST00000606908 1167 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC022079.2-201ENST00000619739 566 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC091304.6-201ENST00000619761 202 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC132068.1-201ENST00000623805 459 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 HSPA8P17-201ENST00000427029 1382 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
DKK3Q9UBP4 AC021242.1-201ENST00000507315 2035 ntBASIC5.62□□□□□ -1.51
DKK3Q9UBP4 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RNU1-19P-201ENST00000363306 165 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RN7SKP162-201ENST00000363605 345 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RN7SKP6-201ENST00000364795 319 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 MT-RNR2-201ENST00000387347 1559 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC005042.1-201ENST00000393397 800 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RPL10P10-201ENST00000403509 664 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 Y_RNA.625-201ENST00000411256 107 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 NANOGP4-201ENST00000427230 913 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 KATNBL1P3-201ENST00000443475 909 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 SPRYD7P1-201ENST00000443861 570 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms