Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC010476.1-201ENST00000519111 851 ntBASIC5.91□□□□□ -1.46
SHANK3Q9BYB0 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SHANK3Q9BYB0 AC113403.1-201ENST00000604910 193 ntBASIC5.91□□□□□ -1.46
SHANK3Q9BYB0 AC024023.1-201ENST00000624530 922 ntBASIC5.91□□□□□ -1.46
SHANK3Q9BYB0 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SHANK3Q9BYB0 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 AC010168.2-201ENST00000562691 5428 ntBASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 AC092451.3-201ENST00000625067 1343 ntBASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHANK3Q9BYB0 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 UBBP2-201ENST00000376781 231 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC097374.1-203ENST00000400783 485 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 RNU6-628P-201ENST00000410675 107 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 EIF4A1P3-201ENST00000411521 244 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC007738.1-201ENST00000413892 348 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AL136231.1-201ENST00000429407 730 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 ISCUP1-201ENST00000454451 448 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC091564.1-201ENST00000464563 479 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 TPT1P3-201ENST00000492841 512 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 AC090506.2-201ENST00000624521 419 ntBASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.9□□□□□ -1.47
SHANK3Q9BYB0 ADAM24P-201ENST00000398655 2101 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 OR5P1P-201ENST00000299512 925 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 RN7SKP33-201ENST00000410942 340 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AC092647.1-201ENST00000420654 287 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AL935212.3-201ENST00000450729 284 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AC008958.1-201ENST00000511047 682 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AC105031.1-201ENST00000518550 476 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AP000827.1-201ENST00000527814 258 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AC005899.7-201ENST00000618199 588 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AP005019.3-201ENST00000620418 560 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AL445487.1-201ENST00000415694 1580 ntBASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SHANK3Q9BYB0 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 MIR491-201ENST00000384877 84 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC011998.1-201ENST00000433403 117 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC006349.1-201ENST00000555526 235 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 MIR6867-201ENST00000610636 67 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC013429.2-201ENST00000418798 781 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AL354766.1-201ENST00000423396 542 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 EIF4HP2-201ENST00000424380 563 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 RPL21P43-201ENST00000425440 472 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 RPL21P89-201ENST00000444021 467 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC098799.3-201ENST00000506095 438 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 MIR4286-201ENST00000580651 93 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC007546.1-201ENST00000619452 559 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC015908.5-201ENST00000623289 343 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AC006065.6-201ENST00000625201 545 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 AL139254.3-201ENST00000641097 674 ntBASIC5.88□□□□□ -1.47
SHANK3Q9BYB0 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms