Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC093663.2-201ENST00000484625 313 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 NPM1P28-201ENST00000492269 840 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 RPSAP51-201ENST00000497462 645 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC098976.1-201ENST00000513014 541 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC027216.1-201ENST00000577726 685 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 SNORD39.2-201ENST00000579995 76 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 MIR3667-201ENST00000581025 74 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC234771.5-201ENST00000600161 514 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 BMS1P7-201ENST00000602440 1052 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AP005432.2-201ENST00000608162 586 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 CR589904.2-201ENST00000612533 440 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC105105.5-201ENST00000622635 1294 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC080188.3-201ENST00000624842 748 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 AP000473.2-201ENST00000602659 1537 ntBASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC3Q9BQI4 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AL603750.1-201ENST00000624216 1717 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AL021331.1-201ENST00000402817 582 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 RNU2-50P-201ENST00000410494 143 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC019050.1-201ENST00000418508 492 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 MTND4LP13-201ENST00000425022 298 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 IGHV5-78-201ENST00000450948 295 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 RBMY2TP-201ENST00000451162 947 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 BX842559.2-201ENST00000451418 605 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 CR383656.14-201ENST00000551951 406 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC090079.2-201ENST00000575289 768 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC006272.2-201ENST00000594725 163 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AC025016.1-201ENST00000616746 682 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 AP001029.2-203ENST00000589795 4910 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 TCP11X1-202ENST00000622971 1372 ntBASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC3Q9BQI4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 SAMMSON-213ENST00000641336 1521 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 MAPK10-263ENST00000641052 4307 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 RNU6-398P-201ENST00000384143 109 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 SNORA5.1-201ENST00000384275 131 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 AL035079.1-201ENST00000405210 287 ntBASIC4.88□□□□□ -1.63
CCDC3Q9BQI4 RANP4-201ENST00000413361 655 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms