Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LAP3P1-201ENST00000403648 294 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AL136116.2-201ENST00000404020 785 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AL139039.2-201ENST00000407436 479 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 TRIM60P17-201ENST00000415181 719 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AF186996.5-201ENST00000418098 904 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 E2F6P2-201ENST00000420708 748 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC007064.3-201ENST00000422608 359 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AJ239321.1-201ENST00000424255 564 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AL137845.2-201ENST00000444292 988 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 RPS17P2-201ENST00000461663 408 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 RPL7AP6-201ENST00000477943 801 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 RN7SL319P-201ENST00000480656 221 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC008410.1-201ENST00000483777 339 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AK4P6-201ENST00000505168 528 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC021146.3-201ENST00000511911 260 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 RNU6-319P-201ENST00000516025 108 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 RN7SKP34-201ENST00000516142 244 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 SEC11B-201ENST00000518383 499 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC107918.3-201ENST00000533272 382 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC067805.1-201ENST00000559344 470 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AGGF1P9-201ENST00000561884 913 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC016180.1-201ENST00000567945 403 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AL137072.1-201ENST00000603444 466 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC013244.1-201ENST00000604279 193 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 MEMO1P5-201ENST00000604810 406 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 MIR6719-201ENST00000622428 87 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC018445.2-201ENST00000622987 260 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC068446.1-201ENST00000556425 1549 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 SNORA73.1-201ENST00000363107 205 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 MIR105-2-201ENST00000385083 81 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 CHMP1B2P-201ENST00000399581 597 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 RPL35AP21-201ENST00000437667 333 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 SCAND3P1-201ENST00000439854 1060 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC073052.1-201ENST00000440417 714 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 ARL4AP3-201ENST00000441452 574 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 snoU13.20-201ENST00000459180 104 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 RPL37AP8-201ENST00000494116 276 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC117525.1-201ENST00000515228 503 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 AL049794.2-201ENST00000616301 365 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 AL158196.1-201ENST00000616786 434 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 AC007382.1-201ENST00000624376 2618 ntBASIC4.35□□□□□ -1.71
SKA3Q8IX90 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SKA3Q8IX90 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms