Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC084824.2-201ENST00000548906 345 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 EDDM3DP-201ENST00000554692 434 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC106734.1-201ENST00000568646 663 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 MIR4270-201ENST00000581799 70 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC021851.1-201ENST00000608537 1082 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC087385.3-201ENST00000620477 187 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 CYP4F35P-202ENST00000636121 390 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC097063.1-201ENST00000426714 1797 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 IQCB2P-201ENST00000401788 1633 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 CASC19-261ENST00000641853 1638 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 SNORA17.1-201ENST00000362945 126 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 RNU1-136P-201ENST00000384181 164 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 RNU6-925P-201ENST00000384629 104 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC069282.1-201ENST00000411911 526 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AL024507.1-201ENST00000412741 274 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 NPM1P40-201ENST00000412758 733 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 RPL6P5-201ENST00000445678 828 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 TRY2P-201ENST00000448860 689 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC037198.2-201ENST00000478845 733 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 RPL21P47-201ENST00000483696 477 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC069304.1-201ENST00000491593 704 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC133963.2-201ENST00000513686 578 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 SCARNA1-201ENST00000517138 166 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 BUD31P1-201ENST00000521828 359 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC068993.1-201ENST00000546724 589 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC127381.1-201ENST00000555979 939 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC095055.1-201ENST00000603472 1113 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC026741.1-201ENST00000605892 482 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AF129408.1-201ENST00000608767 431 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC068831.8-201ENST00000620171 435 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 MIR7703-201ENST00000620784 77 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC074101.1-201ENST00000637861 241 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 AC119674.1-212ENST00000641155 993 ntBASIC5.17□□□□□ -1.58
COL28A1Q2UY09 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL28A1Q2UY09 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 PWAR1-201ENST00000624188 2414 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 RN7SKP6-201ENST00000364795 319 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 SNORA79B-201ENST00000410557 148 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 UBE2V1P11-201ENST00000411559 285 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 GPS2P1-201ENST00000411761 986 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC119751.6-201ENST00000416712 186 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC009480.2-201ENST00000422916 432 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 PNRC2P1-201ENST00000423940 420 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 TMEM183AP1-205ENST00000432739 290 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.16□□□□□ -1.58
COL28A1Q2UY09 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.16□□□□□ -1.58
COL28A1Q2UY09 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms