Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA1P55317 OR5M2P-201ENST00000529003 936 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA1P55317 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.38□□□□□ -1.71
FOXA1P55317 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA1P55317 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 AC007066.2-202ENST00000566531 914 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA1P55317 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA1P55317 BNIP3P32-201ENST00000600015 554 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA1P55317 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA1P55317 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA1P55317 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA1P55317 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
FOXA1P55317 VN2R3P-201ENST00000422626 1412 ntBASIC4.38□□□□□ -1.71
FOXA1P55317 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.37□□□□□ -1.71
FOXA1P55317 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA1P55317 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA1P55317 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
FOXA1P55317 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA1P55317 RNU1-44P-201ENST00000384453 163 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 MIR659-201ENST00000384963 97 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 SPTLC1P2-201ENST00000407089 121 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 SETP15-201ENST00000412724 337 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 OR6C64P-201ENST00000419708 825 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 PDSS1P1-201ENST00000422953 1114 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.37□□□□□ -1.71
FOXA1P55317 RPL36AP15-201ENST00000444514 266 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 RPL31P44-201ENST00000447680 377 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 RPL5P22-201ENST00000480199 884 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 AC012158.1-204ENST00000483430 465 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.37□□□□□ -1.71
FOXA1P55317 AC008897.1-201ENST00000494006 347 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA1P55317 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA1P55317 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
FOXA1P55317 AL160290.3-201ENST00000604869 165 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 AC068870.2-201ENST00000620635 389 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
FOXA1P55317 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA1P55317 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA1P55317 LINC01355-201ENST00000566551 5444 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA1P55317 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA1P55317 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA1P55317 CPHL1P-201ENST00000461341 3407 ntBASIC4.37□□□□□ -1.71
FOXA1P55317 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA1P55317 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA1P55317 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA1P55317 SAMMSON-213ENST00000641336 1521 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA1P55317 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.36□□□□□ -1.71
FOXA1P55317 RNA5SP22-201ENST00000365393 109 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
FOXA1P55317 Z98745.1-201ENST00000402553 494 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA1P55317 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.36□□□□□ -1.71
FOXA1P55317 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA1P55317 RPEP2-201ENST00000432149 701 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA1P55317 RPL23AP93-201ENST00000440847 484 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 RN7SL515P-201ENST00000463999 297 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA1P55317 OR5M14P-201ENST00000506803 618 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
FOXA1P55317 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA1P55317 OR7H2P-201ENST00000513483 306 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA1P55317 OR10D4P-201ENST00000525892 951 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA1P55317 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA1P55317 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA1P55317 RN7SL176P-201ENST00000580352 264 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 AC008759.1-201ENST00000589783 983 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 BPIFA4P-203ENST00000603168 689 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 AC090510.2-201ENST00000617465 629 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 AC018445.2-201ENST00000622987 260 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 AC020763.5-201ENST00000623298 430 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA1P55317 OR2L1P-202ENST00000641567 1023 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA1P55317 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA1P55317 ZNF137P-201ENST00000456718 1920 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.36□□□□□ -1.71
FOXA1P55317 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms