Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 Y_RNA.41-201ENST00000362646 102 ntBASIC5.59□□□□□ -1.51
MSX2P35548 RNU4-7P-201ENST00000364758 141 ntBASIC5.59□□□□□ -1.51
MSX2P35548 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX2P35548 SNORA5.1-201ENST00000384275 131 ntBASIC5.59□□□□□ -1.51
MSX2P35548 ZNF603P-201ENST00000405613 487 ntBASIC5.59□□□□□ -1.51
MSX2P35548 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.59□□□□□ -1.51
MSX2P35548 RNU2-22P-201ENST00000411266 212 ntBASIC5.59□□□□□ -1.51
MSX2P35548 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.59□□□□□ -1.51
MSX2P35548 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX2P35548 NMD3P2-201ENST00000421815 761 ntBASIC5.59□□□□□ -1.51
MSX2P35548 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 RPL21P43-201ENST00000425440 472 ntBASIC5.59□□□□□ -1.51
MSX2P35548 RPS27AP6-201ENST00000427962 448 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 AL645939.3-201ENST00000435408 225 ntBASIC5.59□□□□□ -1.51
MSX2P35548 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
MSX2P35548 RBMX2P4-201ENST00000441256 376 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 AC093166.3-201ENST00000448785 303 ntBASIC5.59□□□□□ -1.51
MSX2P35548 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 RNU6-956P-201ENST00000458868 103 ntBASIC5.59□□□□□ -1.51
MSX2P35548 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 RPL5P13-201ENST00000462840 709 ntBASIC5.59□□□□□ -1.51
MSX2P35548 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX2P35548 MTAPP1-201ENST00000489154 819 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC004069.2-201ENST00000505438 1114 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC5.59□□□□□ -1.51
MSX2P35548 CDC42P4-201ENST00000510507 563 ntBASIC5.59□□□□□ -1.51
MSX2P35548 KHDC1P1-201ENST00000511053 508 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC093816.1-201ENST00000515076 913 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC5.59□□□□□ -1.51
MSX2P35548 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX2P35548 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.59□□□□□ -1.51
MSX2P35548 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 AC005771.1-201ENST00000585581 349 ntBASIC5.59□□□□□ -1.51
MSX2P35548 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 AC006539.2-201ENST00000601729 572 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC011451.2-201ENST00000604303 598 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AP003973.1-201ENST00000604639 691 ntBASIC5.59□□□□□ -1.51
MSX2P35548 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX2P35548 AL645933.2-201ENST00000606743 1207 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC011374.2-201ENST00000607135 526 ntBASIC5.59□□□□□ -1.51
MSX2P35548 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 MIR6889-201ENST00000613185 59 ntBASIC5.59□□□□□ -1.51
MSX2P35548 VN1R74P-201ENST00000613259 503 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC012676.3-201ENST00000614983 479 ntBASIC5.59□□□□□ -1.51
MSX2P35548 FRG1HP-204ENST00000617940 757 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AL008636.1-201ENST00000625038 1018 ntBASIC5.59□□□□□ -1.51
MSX2P35548 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
MSX2P35548 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.59□□□□□ -1.51
MSX2P35548 AL603750.1-201ENST00000624216 1717 ntBASIC5.59□□□□□ -1.51
MSX2P35548 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 AP004607.3-201ENST00000530354 3915 ntBASIC5.59□□□□□ -1.52
MSX2P35548 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
MSX2P35548 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
MSX2P35548 CASC19-246ENST00000641625 1606 ntBASIC5.59□□□□□ -1.52
MSX2P35548 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
MSX2P35548 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.58□□□□□ -1.52
MSX2P35548 AL161912.4-201ENST00000623889 2468 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
MSX2P35548 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 AC003973.3-201ENST00000624863 2822 ntBASIC5.58□□□□□ -1.52
MSX2P35548 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
MSX2P35548 AL355852.1-201ENST00000454081 1771 ntBASIC5.58□□□□□ -1.52
MSX2P35548 MFSD8-219ENST00000641228 2559 ntBASIC5.58□□□□□ -1.52
MSX2P35548 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 AL672167.1-206ENST00000356293 943 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RNA5SP27-201ENST00000363839 119 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RN7SKP78-201ENST00000364711 318 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RNA5SP85-201ENST00000365378 119 ntBASIC5.58□□□□□ -1.52
MSX2P35548 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 RNU6-1119P-201ENST00000384349 108 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RNU6-729P-201ENST00000384399 107 ntBASIC5.58□□□□□ -1.52
MSX2P35548 MT-TP-201ENST00000387461 68 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RNA5SP91-201ENST00000390902 119 ntBASIC5.58□□□□□ -1.52
MSX2P35548 RPL23AP59-201ENST00000399415 461 ntBASIC5.58□□□□□ -1.52
MSX2P35548 CHMP1B2P-201ENST00000399581 597 ntBASIC5.58□□□□□ -1.52
MSX2P35548 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX2P35548 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX2P35548 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms