Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
SMARCA1P28370 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
SMARCA1P28370 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
SMARCA1P28370 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.1□□□□□ -1.43
SMARCA1P28370 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SMARCA1P28370 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.09□□□□□ -1.43
SMARCA1P28370 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SMARCA1P28370 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SMARCA1P28370 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SMARCA1P28370 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SMARCA1P28370 TCP11X1-202ENST00000622971 1372 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SMARCA1P28370 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.09□□□□□ -1.43
SMARCA1P28370 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SMARCA1P28370 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
SMARCA1P28370 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SMARCA1P28370 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SMARCA1P28370 SNORA70.6-201ENST00000383934 134 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 MIR105-1-201ENST00000385222 81 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SMARCA1P28370 HMGB3P7-201ENST00000400214 611 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 RPL5P19-201ENST00000404228 893 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 DUTP5-201ENST00000406790 469 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 BMS1P13-201ENST00000417301 885 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AL139148.1-201ENST00000427122 680 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 CLUHP1-201ENST00000435012 1190 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 MTCYBP12-201ENST00000440559 1134 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AC069540.1-201ENST00000446320 988 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 MTCYBP11-201ENST00000447254 1109 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 CYCSP42-201ENST00000450823 238 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 RN7SL222P-201ENST00000476452 299 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 RPL7P41-201ENST00000485823 957 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 AC006499.3-201ENST00000506077 748 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 IMPA1P1-201ENST00000510718 842 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 GTF2F2P1-201ENST00000511083 675 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AC112673.1-201ENST00000513168 575 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC6.09□□□□□ -1.43
SMARCA1P28370 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6.09□□□□□ -1.43
SMARCA1P28370 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 OR7E18P-201ENST00000592589 702 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AC025175.1-201ENST00000606482 759 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC6.09□□□□□ -1.43
SMARCA1P28370 MIR6839-201ENST00000620425 113 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC6.09□□□□□ -1.43
SMARCA1P28370 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC6.09□□□□□ -1.43
SMARCA1P28370 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.09□□□□□ -1.43
SMARCA1P28370 TTC39DP-201ENST00000416781 1688 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
SMARCA1P28370 AC097461.1-201ENST00000568928 2821 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 AC109446.4-201ENST00000623235 2755 ntBASIC6.09□□□□□ -1.43
SMARCA1P28370 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SMARCA1P28370 PCF11-AS1-201ENST00000602322 1516 ntBASIC6.09□□□□□ -1.44
SMARCA1P28370 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.09□□□□□ -1.44
SMARCA1P28370 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.09□□□□□ -1.44
SMARCA1P28370 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SMARCA1P28370 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC023421.1-201ENST00000590535 1785 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
SMARCA1P28370 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.08□□□□□ -1.44
SMARCA1P28370 U3.7-201ENST00000363668 216 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 RNA5SP90-201ENST00000364801 99 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 RNU1-43P-201ENST00000365052 165 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 RNA5SP241-201ENST00000391326 114 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 EI24P3-201ENST00000399046 1062 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 RNU4-74P-201ENST00000411280 161 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC6.08□□□□□ -1.44
SMARCA1P28370 MTATP6P20-201ENST00000414147 562 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AC093422.3-201ENST00000428506 305 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.08□□□□□ -1.44
SMARCA1P28370 CETN4P-201ENST00000432407 469 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AL035246.1-201ENST00000433554 1255 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 RPL19P16-201ENST00000433839 588 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.08□□□□□ -1.44
SMARCA1P28370 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC6.08□□□□□ -1.44
SMARCA1P28370 MYO5BP2-201ENST00000449815 1277 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 SNORD11.1-201ENST00000459482 85 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 MTCO2P6-201ENST00000463134 685 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SMARCA1P28370 RN7SL814P-201ENST00000487715 300 ntBASIC6.08□□□□□ -1.44
SMARCA1P28370 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms