| MT3 | P25713 | Y_RNA.534-201 | ENST00000384599 | 112 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC073263.1-202 | ENST00000401851 | 924 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | MRPL32P1-201 | ENST00000406301 | 247 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RNU6ATAC16P-201 | ENST00000408591 | 138 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RNU6-607P-201 | ENST00000411283 | 108 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC245452.3-201 | ENST00000413294 | 162 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | ATP5HP4-201 | ENST00000414313 | 475 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AF186996.5-201 | ENST00000418098 | 904 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC114760.1-201 | ENST00000420310 | 652 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | TRPC6P-201 | ENST00000421233 | 880 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL353052.1-201 | ENST00000428673 | 818 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | HLA-T-206 | ENST00000429813 | 450 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | HMGB1P27-201 | ENST00000431429 | 603 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | Z83841.1-201 | ENST00000433173 | 968 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | HSPD1P21-201 | ENST00000436541 | 245 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL353662.1-201 | ENST00000439099 | 327 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL390119.1-201 | ENST00000440329 | 312 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RPL23AP33-201 | ENST00000442301 | 452 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL138752.1-201 | ENST00000452964 | 351 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | NPAP1P2-201 | ENST00000456716 | 1234 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | CREB3L2-205 | ENST00000458726 | 776 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RNU6-953P-201 | ENST00000459154 | 107 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RPL37P6-201 | ENST00000460682 | 294 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC108161.1-201 | ENST00000461060 | 402 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RN7SL724P-201 | ENST00000461895 | 271 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC133134.1-201 | ENST00000466800 | 359 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | BCL2L15-204 | ENST00000471267 | 267 nt | TSL 1 (best) BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC026254.2-201 | ENST00000475295 | 371 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RN7SL822P-201 | ENST00000475674 | 296 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RN7SL88P-201 | ENST00000480166 | 299 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RPL7AP23-201 | ENST00000482625 | 776 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | OR9A1P-202 | ENST00000484361 | 945 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RN7SL159P-201 | ENST00000485164 | 292 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RN7SL291P-201 | ENST00000487916 | 289 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | TDGF1P3-201 | ENST00000493351 | 567 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC133435.1-201 | ENST00000498753 | 576 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | LINC02447-203 | ENST00000504402 | 292 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | OCIAD1-210 | ENST00000506801 | 571 nt | TSL 2 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC010261.2-202 | ENST00000506875 | 494 nt | TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC008716.1-201 | ENST00000511084 | 513 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | GMPSP1-201 | ENST00000514075 | 579 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | KRTAP9-12P-201 | ENST00000514388 | 532 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RNU4ATAC12P-201 | ENST00000516460 | 113 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RN7SKP2-201 | ENST00000517003 | 319 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RN7SKP258-201 | ENST00000517151 | 304 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | SNORA31.22-201 | ENST00000517204 | 135 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC073581.1-201 | ENST00000519036 | 575 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | SDCBP-207 | ENST00000520168 | 1097 nt | TSL 2 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC103783.1-201 | ENST00000520506 | 373 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | LINC01606-206 | ENST00000520929 | 411 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC084128.1-201 | ENST00000523112 | 501 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC023232.1-201 | ENST00000524963 | 285 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AP000859.1-201 | ENST00000525536 | 307 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC010319.1-201 | ENST00000526892 | 1258 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | MDM2-232 | ENST00000544561 | 213 nt | TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC078776.1-201 | ENST00000546558 | 562 nt | TSL 4 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC008770.2-201 | ENST00000547473 | 542 nt | APPRIS P1 TSL 4 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC060814.3-201 | ENST00000557717 | 460 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | SPATA8-202 | ENST00000558553 | 406 nt | APPRIS ALT2 TSL 2 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | RBMX-207 | ENST00000562646 | 2148 nt | TSL 1 (best) BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | NDUFA3P6-201 | ENST00000571486 | 250 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AF001548.2-201 | ENST00000574212 | 836 nt | TSL 2 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC005291.1-201 | ENST00000577743 | 641 nt | TSL 2 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | MIR5701-3-201 | ENST00000578890 | 82 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | MIR5701-1-201 | ENST00000585138 | 82 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC020917.2-201 | ENST00000587343 | 401 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC008474.1-201 | ENST00000589127 | 573 nt | TSL 4 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC008770.1-206 | ENST00000589551 | 523 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | ZNF799-204 | ENST00000595766 | 576 nt | TSL 4 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | ZNF415-209 | ENST00000595813 | 580 nt | TSL 4 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AURKC-206 | ENST00000598785 | 1125 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL137002.1-201 | ENST00000600642 | 182 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL122127.1-201 | ENST00000603832 | 327 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC004832.4-201 | ENST00000608952 | 331 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC093799.2-201 | ENST00000610062 | 578 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC018926.2-201 | ENST00000611214 | 498 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | U3.50-201 | ENST00000611947 | 228 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | Metazoa_SRP.159-201 | ENST00000612585 | 265 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | Metazoa_SRP.140-201 | ENST00000613842 | 252 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC034102.8-201 | ENST00000615146 | 484 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | FRG1HP-203 | ENST00000615326 | 593 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | MIR5701-2-201 | ENST00000615634 | 82 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | BX510359.8-201 | ENST00000617713 | 296 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL391987.5-201 | ENST00000618472 | 412 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL365265.1-201 | ENST00000621045 | 234 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | EDRF1-AS1-214 | ENST00000622798 | 526 nt | TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | ALG13-226 | ENST00000622986 | 582 nt | TSL 2 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AC073593.1-201 | ENST00000624500 | 411 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | IPO4-221 | ENST00000625289 | 297 nt | TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | LINC01359-207 | ENST00000634799 | 487 nt | TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | AL590644.1-202 | ENST00000634972 | 590 nt | TSL 3 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | LINC00595-215 | ENST00000635422 | 651 nt | TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | FAM238A-202 | ENST00000637359 | 442 nt | BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | FOXN1-201 | ENST00000226247 | 3436 nt | APPRIS P1 TSL 1 (best) BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | CALCOCO1-210 | ENST00000548263 | 3888 nt | TSL 1 (best) BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | LINC00265-201 | ENST00000340510 | 3049 nt | TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | HABP2-201 | ENST00000351270 | 3009 nt | APPRIS P3 TSL 1 (best) BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | SBNO1-203 | ENST00000602398 | 4313 nt | APPRIS ALT1 TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | KAT14-201 | ENST00000377681 | 3483 nt | APPRIS ALT1 TSL 5 BASIC | 2.58 | □□□□□ -2 | | |
| MT3 | P25713 | CDC42SE1-202 | ENST00000439374 | 3498 nt | APPRIS P1 TSL 5 BASIC | 2.58 | □□□□□ -2 | | |