Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC093698.1-201ENST00000423843 571 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 NPM1P22-201ENST00000427761 952 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 RPL7P4-203ENST00000430239 730 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AL513175.1-201ENST00000431492 780 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC091390.2-201ENST00000432573 374 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 RPL7P59-201ENST00000447700 943 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC027673.1-201ENST00000456245 405 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 RPL12P30-201ENST00000488389 499 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC5.16□□□□□ -1.58
HOXA3O43365 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 RPL7L1P13-201ENST00000511702 739 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC008549.1-201ENST00000512900 643 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC116347.2-201ENST00000514912 523 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 RNY4P37-201ENST00000516225 96 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 RNA5SP206-201ENST00000516703 121 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.16□□□□□ -1.58
HOXA3O43365 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 TPRX1P1-201ENST00000557620 319 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC138915.2-201ENST00000569776 97 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.16□□□□□ -1.58
HOXA3O43365 OR4G1P-201ENST00000588632 938 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC073046.2-201ENST00000604756 527 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 SNORA74.4-201ENST00000607595 199 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AL589743.7-201ENST00000612637 233 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 MIR7973-1-201ENST00000614683 76 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC018926.3-201ENST00000618841 406 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AP001264.1-201ENST00000620602 703 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 ATE1-AS1-202ENST00000636460 506 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 PDZK1P1-202ENST00000425209 1350 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 SAGE3P-201ENST00000619800 1635 ntBASIC5.15□□□□□ -1.58
HOXA3O43365 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.15□□□□□ -1.58
HOXA3O43365 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
HOXA3O43365 AC125238.2-201ENST00000430003 1440 ntBASIC5.15□□□□□ -1.58
HOXA3O43365 AC135352.1-201ENST00000506173 1418 ntBASIC5.15□□□□□ -1.58
HOXA3O43365 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HOXA3O43365 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HOXA3O43365 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HOXA3O43365 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.15□□□□□ -1.58
HOXA3O43365 TEX21P-201ENST00000447107 1476 ntBASIC5.15□□□□□ -1.58
HOXA3O43365 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.15□□□□□ -1.58
HOXA3O43365 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HOXA3O43365 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.15□□□□□ -1.58
HOXA3O43365 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC5.15□□□□□ -1.58
HOXA3O43365 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
HOXA3O43365 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 RNU6-582P-201ENST00000362989 107 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 RNU6-492P-201ENST00000363035 104 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 RNU6-501P-201ENST00000364072 100 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 RNU6-259P-201ENST00000383999 107 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 RNY3P14-201ENST00000384309 102 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AC004386.1-201ENST00000393214 761 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 AL590290.1-201ENST00000405336 380 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AL596448.1-201ENST00000415024 392 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AL157884.1-201ENST00000424561 454 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms