Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC022417.1-201ENST00000624768 1303 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 PHKBP1-201ENST00000450951 1951 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC011933.2-201ENST00000578539 2790 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AL034549.2-201ENST00000618285 3373 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC079741.1-201ENST00000321498 212 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 RN7SKP113-201ENST00000363891 295 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 SNORD56.6-201ENST00000384569 71 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 C4BPAP2-201ENST00000428434 478 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 MTCO3P21-201ENST00000430791 643 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 TMX2P1-201ENST00000436507 708 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 MTND2P40-201ENST00000436718 841 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 HMGB1P3-201ENST00000502802 616 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 GAPDHP62-201ENST00000515313 990 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AL049870.4-201ENST00000555741 486 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC009852.2-201ENST00000567898 485 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC027216.1-201ENST00000577726 685 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AP005262.1-201ENST00000582646 997 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC010503.3-201ENST00000594355 540 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC009027.1-201ENST00000604510 479 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC073869.10-201ENST00000642016 354 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AL359715.4-201ENST00000606629 1436 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 HSPD1P11-201ENST00000508643 1702 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 AL360270.2-201ENST00000562952 5985 ntBASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PCDHGA1Q9Y5H4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 MFSD8-216ENST00000641147 4009 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 RNU4-39P-201ENST00000362455 127 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 RNA5SP90-201ENST00000364801 99 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 RNU6-31P-201ENST00000384388 108 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 RNU6-883P-201ENST00000384597 107 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 MIR320B1-201ENST00000390209 79 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 LSM5-206ENST00000409987 504 ntTSL 5 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 RPL6P29-201ENST00000414863 865 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC019050.1-201ENST00000418508 492 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC092570.3-201ENST00000420113 693 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 DNAJC19P7-201ENST00000428811 344 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AL161722.2-201ENST00000434731 981 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 MTND6P18-201ENST00000439477 513 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 NDUFA12P1-201ENST00000455914 406 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 PSMC1P13-201ENST00000458195 985 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 IGLV2-34-201ENST00000490007 283 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 SUMO1P1-201ENST00000497904 306 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC021106.1-201ENST00000509020 1058 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms