Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL137100.1-201ENST00000556703 1620 ntBASIC4.83□□□□□ -1.64
SHROOM3Q8TF72 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SHROOM3Q8TF72 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHROOM3Q8TF72 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC010928.1-201ENST00000592477 1447 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 RNA5SP387-201ENST00000364226 106 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 CENPIP1-201ENST00000425713 902 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 RPS27AP12-201ENST00000429552 465 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 CBX1P1-201ENST00000440184 427 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 RPL10P17-201ENST00000453852 316 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC109327.1-201ENST00000471666 403 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC093840.1-201ENST00000511599 336 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC022726.1-201ENST00000587475 207 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC130352.1-201ENST00000602979 661 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 IMMP1LP1-201ENST00000605170 488 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AL121873.1-201ENST00000616013 524 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC138965.3-201ENST00000623875 498 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 RBPJP2-201ENST00000618187 1444 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AL391684.1-202ENST00000641293 1636 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 Z97832.1-201ENST00000402490 328 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 MIR1271-201ENST00000408537 86 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 TPT1P1-201ENST00000458495 518 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 RPL23AP37-201ENST00000479658 549 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC007016.1-201ENST00000512110 244 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC138832.1-201ENST00000522871 556 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 MED28P5-201ENST00000528254 438 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 MIR3939-201ENST00000582614 106 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AL121932.1-201ENST00000605542 214 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 FAM27B-201ENST00000610601 213 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 AC004232.3-201ENST00000622977 525 ntBASIC4.82□□□□□ -1.64
SHROOM3Q8TF72 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 STX3-208ENST00000641815 3236 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RNU1-64P-201ENST00000365443 163 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AC025750.1-201ENST00000399891 379 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RNU4-25P-201ENST00000410569 230 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AC004074.1-201ENST00000421810 1063 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 GTF3AP5-201ENST00000442645 697 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 MORF4L2P1-201ENST00000503761 858 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RNA5SP464-201ENST00000516251 108 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AC021483.2-201ENST00000567415 758 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RN7SL652P-201ENST00000577769 300 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 MIR4429-201ENST00000580105 73 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 MIR3667-201ENST00000581025 74 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AC010487.1-201ENST00000594408 1172 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AC114781.5-201ENST00000615297 108 ntBASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SHROOM3Q8TF72 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHROOM3Q8TF72 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHROOM3Q8TF72 SNORA70.4-201ENST00000365509 134 ntBASIC4.8□□□□□ -1.64
SHROOM3Q8TF72 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHROOM3Q8TF72 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.8□□□□□ -1.64
SHROOM3Q8TF72 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms