Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AL139095.3-201ENST00000419672 1203 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 PRPF38AP1-201ENST00000451976 933 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 FGB-207ENST00000509493 1164 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC103792.1-201ENST00000603591 919 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AP005131.7-201ENST00000610087 611 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC090589.1-201ENST00000473109 362 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC108064.1-201ENST00000513791 460 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AL139041.1-201ENST00000605480 610 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 RPL12P9-201ENST00000412942 488 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 COX5BP7-201ENST00000414780 274 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC006065.1-201ENST00000422539 802 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 RPL23AP93-201ENST00000440847 484 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 OFD1P8Y-201ENST00000449148 1433 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC092754.1-201ENST00000472975 479 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 DSTNP2-201ENST00000504533 515 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AL359219.2-201ENST00000555184 348 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC084783.1-201ENST00000565846 910 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC106785.1-201ENST00000565935 262 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC022916.3-201ENST00000592961 742 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC093388.1-201ENST00000609166 430 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC024941.1-201ENST00000612250 334 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 SMG1P7-201ENST00000565246 2704 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 CARF-203ENST00000414439 2099 ntTSL 2 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 RN7SKP114-201ENST00000410327 279 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 CEACAMP8-201ENST00000413902 580 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 HSPD1P12-201ENST00000429127 1069 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 RN7SL441P-201ENST00000492388 296 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 RNU6-709P-201ENST00000517257 104 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 OR8A2P-201ENST00000528631 952 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 OTUD4P1-201ENST00000237841 3067 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AC104623.2-202ENST00000623477 4002 ntBASIC1.46□□□□□ -2.18
SYNE1Q8NF91 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
SYNE1Q8NF91 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 AL390316.1-201ENST00000406279 553 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 SNRPFP1-201ENST00000414761 252 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 AC114755.5-201ENST00000447760 831 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 PPIAP21-201ENST00000464473 501 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 AC008782.1-201ENST00000603386 430 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 Xist_exon4.1-201ENST00000615964 126 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 AC002044.3-201ENST00000623314 541 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 AP000542.2-201ENST00000623199 6179 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC1.45□□□□□ -2.18
SYNE1Q8NF91 RNA5SP130-201ENST00000364431 114 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 RNA5SP509-201ENST00000364577 119 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 MIR134-201ENST00000385258 73 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 GLUD1P9-201ENST00000420997 1173 ntBASIC1.45□□□□□ -2.18
SYNE1Q8NF91 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms