Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC069307.1-201ENST00000602820 447 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC097504.2-201ENST00000608088 454 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 EIF3FP1-201ENST00000613970 806 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AL356274.1-201ENST00000617064 410 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 SMG1P7-201ENST00000565246 2704 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC018809.2-201ENST00000602436 3823 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 RNA5SP30-201ENST00000365552 115 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 RNU4-31P-201ENST00000384211 141 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 RPS6P23-201ENST00000413224 722 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 BX664727.1-201ENST00000416024 466 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 OR6K4P-201ENST00000423179 955 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC068287.1-201ENST00000430283 295 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AL096829.2-201ENST00000446582 742 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 HMGN1P5-201ENST00000448591 263 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 CYCSP20-201ENST00000473154 315 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC107398.1-201ENST00000486904 505 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC026979.1-201ENST00000492525 396 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC023424.1-201ENST00000496058 459 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 CDH12P2-201ENST00000504393 298 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 ASNSP4-201ENST00000511103 447 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 RN7SKP141-201ENST00000516167 338 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 RNU6-941P-201ENST00000516346 108 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 CIR1P1-201ENST00000524055 1133 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 HSPE1P2-201ENST00000554777 306 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AGGF1P7-201ENST00000562369 913 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC136624.4-201ENST00000573044 370 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 RBM22P1-201ENST00000578589 1214 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC015712.7-201ENST00000615211 635 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC091905.4-201ENST00000623432 202 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC090772.4-201ENST00000623599 362 ntBASIC5.19□□□□□ -1.58
COL28A1Q2UY09 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL28A1Q2UY09 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 MIR133B-201ENST00000362210 119 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RN7SKP145-201ENST00000363291 303 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RNA5SP505-201ENST00000364748 108 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RNU1-149P-201ENST00000390870 161 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RNU6-796P-201ENST00000391086 107 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RN7SKP126-201ENST00000411143 300 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 COX6B1P1-201ENST00000415962 213 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 OR6D1P-201ENST00000436165 939 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RPL7P33-201ENST00000444159 742 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC105399.1-202ENST00000447303 205 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 RNU5A-7P-201ENST00000515979 116 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 HMGB1P40-201ENST00000525121 540 ntBASIC5.18□□□□□ -1.58
COL28A1Q2UY09 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.18□□□□□ -1.58
COL28A1Q2UY09 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms