Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL133243.1-201ENST00000614487 366 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
COL4A4P53420 MAPK10-328ENST00000641553 4009 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 AC104623.2-202ENST00000623477 4002 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.95□□□□□ -1.62
COL4A4P53420 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
COL4A4P53420 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
COL4A4P53420 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 RNU1-130P-201ENST00000363930 160 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 AL358178.1-201ENST00000407698 397 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC4.95□□□□□ -1.62
COL4A4P53420 RPL23AP26-201ENST00000412728 464 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 E2F6P2-201ENST00000420708 748 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.95□□□□□ -1.62
COL4A4P53420 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC4.95□□□□□ -1.62
COL4A4P53420 UQCRHP4-201ENST00000471686 272 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 AC105137.1-201ENST00000484355 562 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.95□□□□□ -1.62
COL4A4P53420 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.95□□□□□ -1.62
COL4A4P53420 OR4A2P-201ENST00000527276 913 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL4A4P53420 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 TET1P1-201ENST00000426627 2301 ntBASIC4.95□□□□□ -1.62
COL4A4P53420 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
COL4A4P53420 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC4.95□□□□□ -1.62
COL4A4P53420 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL4A4P53420 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
COL4A4P53420 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.94□□□□□ -1.62
COL4A4P53420 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
COL4A4P53420 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 MIR554-201ENST00000384874 96 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 RPL21P65-201ENST00000406094 466 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.94□□□□□ -1.62
COL4A4P53420 AL356095.1-201ENST00000417217 199 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 AL451139.1-201ENST00000434718 346 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 RPL23AP83-201ENST00000434984 473 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 GTF3AP5-201ENST00000442645 697 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.94□□□□□ -1.62
COL4A4P53420 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.94□□□□□ -1.62
COL4A4P53420 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.94□□□□□ -1.62
COL4A4P53420 AC010547.7-201ENST00000570323 333 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 MIR4286-201ENST00000580651 93 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC4.94□□□□□ -1.62
COL4A4P53420 AC091979.2-201ENST00000607514 214 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 AL023881.1-201ENST00000621088 301 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
COL4A4P53420 VN2R3P-201ENST00000422626 1412 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 AC003985.2-201ENST00000562268 1669 ntBASIC4.94□□□□□ -1.62
COL4A4P53420 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL4A4P53420 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.94□□□□□ -1.62
COL4A4P53420 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.94□□□□□ -1.62
COL4A4P53420 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC4.94□□□□□ -1.62
COL4A4P53420 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC4.93□□□□□ -1.62
COL4A4P53420 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A4P53420 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL4A4P53420 RPS3AP25-201ENST00000411660 793 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 OR8G2P-201ENST00000412796 908 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 RAB9AP4-201ENST00000415230 609 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.93□□□□□ -1.62
COL4A4P53420 AC011998.1-201ENST00000433403 117 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.93□□□□□ -1.62
COL4A4P53420 AC104651.2-201ENST00000447549 528 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 AC093166.2-201ENST00000455969 1017 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.93□□□□□ -1.62
COL4A4P53420 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.93□□□□□ -1.62
COL4A4P53420 FKBP1BP1-201ENST00000553366 325 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 AC010503.3-201ENST00000594355 540 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 AC090181.2-201ENST00000602975 672 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 OR8G7P-201ENST00000616658 848 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A4P53420 THAP12P5-201ENST00000405864 2275 ntBASIC4.93□□□□□ -1.62
COL4A4P53420 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
COL4A4P53420 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.93□□□□□ -1.62
COL4A4P53420 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms