Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RN7SKP199-201ENST00000410325 305 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.7□□□□□ -1.66
SHMT2P34897 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.7□□□□□ -1.66
SHMT2P34897 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.7□□□□□ -1.66
SHMT2P34897 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.7□□□□□ -1.66
SHMT2P34897 RPS5P7-201ENST00000456664 608 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AC020890.1-201ENST00000491837 504 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.7□□□□□ -1.66
SHMT2P34897 SNORD116-30-201ENST00000516468 85 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 RNU4-18P-201ENST00000516751 149 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 RNA5SP392-201ENST00000516905 112 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AC026688.1-201ENST00000520639 1168 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 BUD31P1-201ENST00000521828 359 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.7□□□□□ -1.66
SHMT2P34897 AL049830.4-201ENST00000555149 351 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AL049839.1-201ENST00000556151 657 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 MIR4480-201ENST00000582492 71 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SHMT2P34897 IMMP1LP1-201ENST00000605170 488 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AL121932.1-201ENST00000605542 214 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AC007497.1-201ENST00000610421 561 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 OR8G7P-201ENST00000616658 848 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AC091953.3-201ENST00000623220 236 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 AC132825.1-201ENST00000463573 2247 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AC009643.2-201ENST00000603543 1448 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 AL672167.1-203ENST00000641299 2975 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.7□□□□□ -1.66
SHMT2P34897 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHMT2P34897 NCLP2-201ENST00000416078 1462 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.69□□□□□ -1.66
SHMT2P34897 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SHMT2P34897 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHMT2P34897 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHMT2P34897 SMG1P6-201ENST00000532337 2930 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHMT2P34897 BMS1P3-201ENST00000372011 932 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 MIR937-201ENST00000401271 86 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 AL592291.1-201ENST00000403830 352 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.69□□□□□ -1.66
SHMT2P34897 AL360081.1-201ENST00000428299 555 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 AC008072.1-201ENST00000434254 824 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.69□□□□□ -1.66
SHMT2P34897 MTCYBP14-201ENST00000457471 715 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 CYCSP34-201ENST00000458172 304 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 AC016687.1-201ENST00000482574 353 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 OR9N1P-201ENST00000491296 333 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 AL133372.1-201ENST00000493565 745 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
SHMT2P34897 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.69□□□□□ -1.66
SHMT2P34897 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.69□□□□□ -1.66
SHMT2P34897 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.69□□□□□ -1.66
SHMT2P34897 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.69□□□□□ -1.66
SHMT2P34897 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
SHMT2P34897 UBE2FP2-201ENST00000566646 462 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
SHMT2P34897 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.69□□□□□ -1.66
SHMT2P34897 AL391358.1-201ENST00000605342 190 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.69□□□□□ -1.66
SHMT2P34897 AC012414.7-202ENST00000622705 1090 ntBASIC4.69□□□□□ -1.66
SHMT2P34897 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.69□□□□□ -1.66
SHMT2P34897 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHMT2P34897 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHMT2P34897 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHMT2P34897 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHMT2P34897 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.68□□□□□ -1.66
SHMT2P34897 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHMT2P34897 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHMT2P34897 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHMT2P34897 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SHMT2P34897 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SHMT2P34897 U3.30-201ENST00000391308 210 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 AC233289.1-201ENST00000403700 508 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 RN7SKP247-201ENST00000411094 308 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.68□□□□□ -1.66
SHMT2P34897 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC4.68□□□□□ -1.66
SHMT2P34897 RBMY2KP-201ENST00000418221 992 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 LINC00993-201ENST00000420453 540 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 CKS1BP6-201ENST00000424932 240 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.68□□□□□ -1.66
SHMT2P34897 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.68□□□□□ -1.66
SHMT2P34897 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.68□□□□□ -1.66
SHMT2P34897 RPS17P8-201ENST00000434525 335 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 UBE2V2P1-201ENST00000434717 398 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 AL451139.1-201ENST00000434718 346 ntBASIC4.68□□□□□ -1.66
SHMT2P34897 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.68□□□□□ -1.66
SHMT2P34897 AC010733.1-201ENST00000451515 401 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms