Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR3149-201ENST00000584629 83 ntBASIC6.7□□□□□ -1.34
MSX1P28360 SIGLEC31P-201ENST00000594237 551 ntBASIC6.7□□□□□ -1.34
MSX1P28360 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 uc_338.21-201ENST00000622458 147 ntBASIC6.7□□□□□ -1.34
MSX1P28360 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.7□□□□□ -1.34
MSX1P28360 AC073488.7-201ENST00000633785 778 ntBASIC6.7□□□□□ -1.34
MSX1P28360 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC6.7□□□□□ -1.34
MSX1P28360 OFD1P5Y-201ENST00000447585 2590 ntBASIC6.7□□□□□ -1.34
MSX1P28360 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 AC107980.1-201ENST00000558671 3355 ntBASIC6.7□□□□□ -1.34
MSX1P28360 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 AL137058.3-201ENST00000624531 3099 ntBASIC6.7□□□□□ -1.34
MSX1P28360 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 LARP1BP1-201ENST00000506036 1359 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AC018688.1-201ENST00000636528 1754 ntBASIC6.69□□□□□ -1.34
MSX1P28360 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC6.69□□□□□ -1.34
MSX1P28360 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.69□□□□□ -1.34
MSX1P28360 RBPJP7-201ENST00000442803 1447 ntBASIC6.69□□□□□ -1.34
MSX1P28360 RBPJP5-201ENST00000449433 1447 ntBASIC6.69□□□□□ -1.34
MSX1P28360 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.69□□□□□ -1.34
MSX1P28360 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
MSX1P28360 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
MSX1P28360 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC6.69□□□□□ -1.34
MSX1P28360 OR52E6-202ENST00000379946 954 ntBASIC6.69□□□□□ -1.34
MSX1P28360 Y_RNA.445-201ENST00000384168 102 ntBASIC6.69□□□□□ -1.34
MSX1P28360 RPL23AP32-201ENST00000395315 459 ntBASIC6.69□□□□□ -1.34
MSX1P28360 RPS20P2-201ENST00000402520 389 ntBASIC6.69□□□□□ -1.34
MSX1P28360 GEMIN2P2-201ENST00000418195 715 ntBASIC6.69□□□□□ -1.34
MSX1P28360 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC6.69□□□□□ -1.34
MSX1P28360 BEND7P1-201ENST00000422058 457 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AC073900.1-201ENST00000429766 776 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC6.69□□□□□ -1.34
MSX1P28360 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.69□□□□□ -1.34
MSX1P28360 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC6.69□□□□□ -1.34
MSX1P28360 RNU6-329P-201ENST00000459618 107 ntBASIC6.69□□□□□ -1.34
MSX1P28360 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 AC015724.1-201ENST00000478577 156 ntBASIC6.69□□□□□ -1.34
MSX1P28360 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX1P28360 AC138409.2-202ENST00000507274 458 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AC008496.1-201ENST00000509131 295 ntBASIC6.69□□□□□ -1.34
MSX1P28360 Y_RNA.720-201ENST00000517166 92 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX1P28360 IGLV1-62-201ENST00000518003 441 ntBASIC6.69□□□□□ -1.34
MSX1P28360 RPL10P18-201ENST00000519384 309 ntBASIC6.69□□□□□ -1.34
MSX1P28360 COX6CP5-201ENST00000527162 228 ntBASIC6.69□□□□□ -1.34
MSX1P28360 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 AC068631.3-201ENST00000538831 225 ntBASIC6.69□□□□□ -1.34
MSX1P28360 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC6.69□□□□□ -1.34
MSX1P28360 AC008083.2-201ENST00000546707 476 ntBASIC6.69□□□□□ -1.34
MSX1P28360 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
MSX1P28360 RN7SL366P-201ENST00000577957 292 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
MSX1P28360 DPPA3P3-201ENST00000603842 430 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AL080274.1-201ENST00000605565 220 ntBASIC6.69□□□□□ -1.34
MSX1P28360 MIR6070-201ENST00000613967 103 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AC087588.2-201ENST00000617667 426 ntBASIC6.69□□□□□ -1.34
MSX1P28360 AC018926.3-201ENST00000618841 406 ntBASIC6.69□□□□□ -1.34
MSX1P28360 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX1P28360 AL590396.3-201ENST00000636334 300 ntBASIC6.69□□□□□ -1.34
MSX1P28360 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC6.69□□□□□ -1.34
MSX1P28360 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
MSX1P28360 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC6.69□□□□□ -1.34
MSX1P28360 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC6.69□□□□□ -1.34
MSX1P28360 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC6.69□□□□□ -1.34
MSX1P28360 ZG16-201ENST00000400752 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 AC091544.5-201ENST00000620192 3815 ntBASIC6.69□□□□□ -1.34
MSX1P28360 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC6.69□□□□□ -1.34
MSX1P28360 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSX1P28360 NAMPTP1-201ENST00000440465 2514 ntBASIC6.69□□□□□ -1.34
MSX1P28360 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC6.68□□□□□ -1.34
MSX1P28360 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC6.68□□□□□ -1.34
MSX1P28360 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms