Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC104260.2-201ENST00000623551 3497 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL5A3P25940 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
COL5A3P25940 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.67□□□□□ -1.5
COL5A3P25940 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.66□□□□□ -1.5
COL5A3P25940 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL5A3P25940 SNRPFP1-201ENST00000414761 252 ntBASIC5.66□□□□□ -1.5
COL5A3P25940 RCC2P2-201ENST00000422174 918 ntBASIC5.66□□□□□ -1.5
COL5A3P25940 AL354766.1-201ENST00000423396 542 ntBASIC5.66□□□□□ -1.5
COL5A3P25940 RPL23AP38-201ENST00000423801 469 ntBASIC5.66□□□□□ -1.5
COL5A3P25940 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.66□□□□□ -1.5
COL5A3P25940 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.66□□□□□ -1.5
COL5A3P25940 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.66□□□□□ -1.5
COL5A3P25940 MRPS21P9-201ENST00000571150 257 ntBASIC5.66□□□□□ -1.5
COL5A3P25940 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.66□□□□□ -1.5
COL5A3P25940 MIR3653-201ENST00000625572 110 ntBASIC5.66□□□□□ -1.5
COL5A3P25940 DDX18P5-201ENST00000534547 1306 ntBASIC5.66□□□□□ -1.5
COL5A3P25940 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A3P25940 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A3P25940 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A3P25940 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A3P25940 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A3P25940 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A3P25940 SNORA70.4-201ENST00000365509 134 ntBASIC5.65□□□□□ -1.5
COL5A3P25940 MIR3065-201ENST00000390137 79 ntBASIC5.65□□□□□ -1.5
COL5A3P25940 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.65□□□□□ -1.5
COL5A3P25940 OR13Z1P-201ENST00000416141 834 ntBASIC5.65□□□□□ -1.5
COL5A3P25940 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.65□□□□□ -1.5
COL5A3P25940 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A3P25940 AC020890.1-201ENST00000491837 504 ntBASIC5.65□□□□□ -1.5
COL5A3P25940 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.65□□□□□ -1.5
COL5A3P25940 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.65□□□□□ -1.5
COL5A3P25940 IPO5P1-202ENST00000600039 287 ntBASIC5.65□□□□□ -1.5
COL5A3P25940 AC020656.2-201ENST00000613291 5309 ntBASIC5.65□□□□□ -1.5
COL5A3P25940 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.65□□□□□ -1.5
COL5A3P25940 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
COL5A3P25940 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A3P25940 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A3P25940 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
COL5A3P25940 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.65□□□□□ -1.51
COL5A3P25940 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.65□□□□□ -1.51
COL5A3P25940 AL157831.1-201ENST00000426134 473 ntBASIC5.65□□□□□ -1.51
COL5A3P25940 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.65□□□□□ -1.51
COL5A3P25940 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.65□□□□□ -1.51
COL5A3P25940 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.65□□□□□ -1.51
COL5A3P25940 OR8R1P-201ENST00000543943 764 ntBASIC5.65□□□□□ -1.51
COL5A3P25940 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.65□□□□□ -1.51
COL5A3P25940 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.65□□□□□ -1.51
COL5A3P25940 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.65□□□□□ -1.51
COL5A3P25940 AC023762.1-201ENST00000603280 584 ntBASIC5.65□□□□□ -1.51
COL5A3P25940 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.65□□□□□ -1.51
COL5A3P25940 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.65□□□□□ -1.51
COL5A3P25940 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL5A3P25940 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.64□□□□□ -1.51
COL5A3P25940 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.64□□□□□ -1.51
COL5A3P25940 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 CYP1D1P-201ENST00000416662 1433 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 RNU1-63P-201ENST00000383902 164 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 AMZ2P2-201ENST00000406819 1057 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 CEACAMP8-201ENST00000413902 580 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 LINC01881-201ENST00000416103 412 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.64□□□□□ -1.51
COL5A3P25940 AL451062.2-201ENST00000427515 271 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 AC114495.1-201ENST00000441274 436 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.64□□□□□ -1.51
COL5A3P25940 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.64□□□□□ -1.51
COL5A3P25940 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.64□□□□□ -1.51
COL5A3P25940 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
COL5A3P25940 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.64□□□□□ -1.51
COL5A3P25940 BNIP3P33-201ENST00000598912 569 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 AC105074.1-201ENST00000623380 3095 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 AC099654.3-201ENST00000447087 1546 ntBASIC5.64□□□□□ -1.51
COL5A3P25940 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL5A3P25940 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL5A3P25940 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL5A3P25940 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.63□□□□□ -1.51
COL5A3P25940 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL5A3P25940 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL5A3P25940 MIR208A-201ENST00000362287 71 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.63□□□□□ -1.51
COL5A3P25940 RPS3AP25-201ENST00000411660 793 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 MFSD13B-201ENST00000420133 1290 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 AL691449.1-201ENST00000426570 421 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms