Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC245028.3-201ENST00000618197 285 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC127459.3-201ENST00000624328 466 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 FOLH1-213ENST00000533034 2225 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC004972.1-201ENST00000623934 2209 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC068860.1-201ENST00000623701 3736 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AP001157.1-201ENST00000550837 2339 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 LINC00954-202ENST00000449086 2995 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 CRBN-203ENST00000432408 2203 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 CDH17-202ENST00000441892 2204 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-1252P-201ENST00000363054 104 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-740P-201ENST00000364734 105 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 Y_RNA.424-201ENST00000384063 103 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 SNORA70I-201ENST00000384544 135 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-1093P-201ENST00000391194 107 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AL358942.1-201ENST00000418595 1178 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AL139184.1-202ENST00000422303 222 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 MTCO3P29-201ENST00000432119 779 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AJ006995.1-201ENST00000433344 572 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RPL21P2-201ENST00000440049 481 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC018738.1-201ENST00000441378 210 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC107983.1-201ENST00000442562 210 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 DBIL5P-202ENST00000453414 250 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AL590326.1-201ENST00000460857 334 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RN7SL263P-201ENST00000467969 290 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RN7SL201P-201ENST00000482306 296 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC073610.1-201ENST00000489971 396 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 FTH1P23-201ENST00000492727 550 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 GAPDHP31-201ENST00000509325 1014 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RN7SKP92-201ENST00000517266 244 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC022616.4-201ENST00000522985 181 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AP000763.2-201ENST00000540641 163 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC061975.4-201ENST00000578466 776 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 TTN-AS1-210ENST00000578746 677 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 MRO-208ENST00000588444 866 ntTSL 3 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 BNIP3P25-201ENST00000596023 559 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC006547.1-208ENST00000598339 805 ntTSL 5 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 RPL23AP90-201ENST00000603820 236 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 YTHDF2P1-201ENST00000604759 1271 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AL354984.3-201ENST00000604803 325 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 WWOX-217ENST00000620008 450 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC012557.3-201ENST00000626439 255 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 MAPK10-354ENST00000641823 2732 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 MAPK10-313ENST00000641405 2469 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 PSMC1P7-201ENST00000495689 1315 ntBASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 ATP9B-208ENST00000586722 1650 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 CASP14-201ENST00000427043 3241 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
VPS9D1Q9Y2B5 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 PLEKHS1-202ENST00000361048 3249 ntAPPRIS P3 TSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 PLEKHS1-207ENST00000619563 3247 ntTSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC068870.3-201ENST00000625077 2536 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 KIAA0753-201ENST00000361413 4859 ntAPPRIS P2 TSL 1 (best) BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms