Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC005858.4-201ENST00000623191 700 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC138305.3-201ENST00000624988 240 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 MYO1B-201ENST00000304164 4933 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC108467.2-201ENST00000617640 1597 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 ACTG2-203ENST00000409731 1413 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RPL23AP57-201ENST00000332361 466 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RNU6-223P-201ENST00000362830 107 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RNU6-730P-201ENST00000383954 104 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RN7SKP205-201ENST00000410999 307 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RN7SKP207-201ENST00000411204 303 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RPL18AP14-201ENST00000417685 526 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 SLC35E1P1-201ENST00000419313 864 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AL592293.2-201ENST00000422292 996 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 TUBB4BP6-201ENST00000437576 479 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RPL7P15-201ENST00000461190 712 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 RPS27AP17-201ENST00000463344 455 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC090142.1-201ENST00000465776 462 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC010301.1-201ENST00000473936 355 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC024451.1-201ENST00000508013 779 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 IGHVII-60-1-201ENST00000519079 256 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC006581.1-201ENST00000545706 496 ntTSL 3 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC020661.2-201ENST00000560114 134 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 HMGB1P6-201ENST00000569046 646 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 MIR4310-201ENST00000582950 57 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 ACTR3BP1-201ENST00000605584 1247 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 SNORD91A-202ENST00000609620 191 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC009248.2-201ENST00000619826 254 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AL356585.4-201ENST00000623078 1229 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 TEX41-265ENST00000627785 704 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AKAP7-202ENST00000342266 2461 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 AC009166.2-201ENST00000624410 2833 ntBASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 MAPK10-244ENST00000639972 2818 ntTSL 5 BASIC7.56□□□□□ -1.2
LIMD1Q9UGP4 ZMYM6-203ENST00000373333 1473 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC245505.2-201ENST00000553572 3055 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 IRAK4-201ENST00000431837 4147 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AL121768.1-201ENST00000613917 2544 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms