Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC092474.3-201ENST00000603022 568 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AL161616.1-201ENST00000611867 286 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MIR6839-201ENST00000620425 113 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AP002371.2-201ENST00000624450 503 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 RN7SKP113-201ENST00000363891 295 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 MIR141-201ENST00000384975 95 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 RNA5SP105-201ENST00000391123 113 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC013442.1-201ENST00000397347 228 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 RPL10P10-201ENST00000403509 664 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 PCNPP4-201ENST00000414817 517 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 VTI1BP4-201ENST00000427516 527 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AL136231.1-201ENST00000429407 730 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 RPS26P4-201ENST00000431743 355 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 ZNF965P-201ENST00000432501 817 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC245517.2-201ENST00000442890 346 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC090804.1-201ENST00000448870 490 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC063943.1-201ENST00000465434 453 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC090543.1-201ENST00000492168 485 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC008897.1-201ENST00000494006 347 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC093770.1-201ENST00000511559 571 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 FTH1P11-201ENST00000517577 551 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AP000859.1-201ENST00000525536 307 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AL136520.1-202ENST00000555494 763 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 BGLT3-201ENST00000564523 994 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 MIR4737-201ENST00000583979 81 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AL671309.1-201ENST00000603750 544 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC079298.2-201ENST00000623885 459 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC097372.4-201ENST00000625025 466 ntBASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC3Q9BQI4 AC006210.2-201ENST00000367074 1545 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 MAPK10-338ENST00000641647 3362 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 MIR133A2-201ENST00000347538 102 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 SNORD115-48-201ENST00000364764 76 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 RNU6-40P-201ENST00000384254 107 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 RNU2-22P-201ENST00000411266 212 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL590139.1-201ENST00000416267 400 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL357078.2-201ENST00000416486 427 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 ELOCP3-201ENST00000439303 348 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL691517.1-201ENST00000440833 1235 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AL354714.3-201ENST00000447284 493 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 RN7SL443P-201ENST00000464331 290 ntBASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC3Q9BQI4 AC010350.1-201ENST00000504908 231 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms