Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5□□□□□ -1.61
VPS39Q96JC1 AC007225.2-201ENST00000562529 256 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 PSMA6P4-201ENST00000603247 718 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 HMGB1P51-201ENST00000605166 638 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5□□□□□ -1.61
VPS39Q96JC1 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5□□□□□ -1.61
VPS39Q96JC1 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5□□□□□ -1.61
VPS39Q96JC1 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
VPS39Q96JC1 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 SNORA73.1-201ENST00000363107 205 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC092642.1-201ENST00000392417 425 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 RN7SKP126-201ENST00000411143 300 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC019050.1-201ENST00000418508 492 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 QRSL1P2-201ENST00000418582 964 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 RPL12P34-201ENST00000424532 479 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC073052.1-201ENST00000440417 714 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC011225.1-201ENST00000457751 369 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 RN7SL799P-201ENST00000475891 298 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 RPS4XP1-201ENST00000482189 787 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 RPS21P4-201ENST00000487122 248 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC010350.1-201ENST00000504908 231 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 RNA5SP249-201ENST00000516127 99 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AF186190.1-201ENST00000517470 480 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC008676.3-201ENST00000521237 435 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AL390726.5-202ENST00000564800 256 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 RN7SL435P-201ENST00000584418 282 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC005021.1-201ENST00000608730 355 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC114546.3-201ENST00000623582 1734 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS39Q96JC1 AC139713.2-215ENST00000641428 5037 ntBASIC4.99□□□□□ -1.61
VPS39Q96JC1 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 CASC19-204ENST00000641001 2055 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS39Q96JC1 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS39Q96JC1 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS39Q96JC1 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS39Q96JC1 SNORA70.10-201ENST00000384515 134 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 ATP5HP3-201ENST00000396994 486 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 DUTP5-201ENST00000406790 469 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC079355.1-201ENST00000421770 223 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 TXNP2-201ENST00000443918 295 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 PDCD5P1-201ENST00000543528 309 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms