Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 TLK1P1-201ENST00000456760 2440 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 IL6STP1-201ENST00000346911 1020 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 MIR365B-201ENST00000362317 111 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 RNU6-618P-201ENST00000363518 112 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 RNA5SP507-201ENST00000363603 121 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AL672167.2-201ENST00000377164 879 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 ATP5HP3-201ENST00000396994 486 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 RN7SKP278-201ENST00000410504 342 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 RNU6-564P-201ENST00000410983 104 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC013429.2-201ENST00000418798 781 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 RPS29P9-201ENST00000440360 171 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC092647.3-201ENST00000443044 633 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 OR7E125P-201ENST00000443450 846 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 RPL7L1P1-201ENST00000448259 785 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 RBMY2TP-201ENST00000451162 947 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 MTND6P32-201ENST00000457611 483 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 TSACC-207ENST00000470342 601 ntTSL 2 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 OR5M14P-201ENST00000506803 618 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC147055.3-201ENST00000510547 851 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 RN7SKP147-201ENST00000517154 244 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 DYNLL1P4-201ENST00000549314 266 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC027281.1-201ENST00000574178 758 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AP005119.2-201ENST00000579735 1105 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 RNF138P2-201ENST00000603490 592 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC016911.1-201ENST00000613297 452 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AP002799.1-201ENST00000623552 423 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AL606537.1-201ENST00000607258 2011 ntBASIC4.39□□□□□ -1.71
SKA3Q8IX90 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SKA3Q8IX90 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
SKA3Q8IX90 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 RNA5SP305-201ENST00000362665 119 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 RNA5SP28-201ENST00000363841 119 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 RNU6-819P-201ENST00000364116 107 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 RN7SKP224-201ENST00000364140 325 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 RNU4-4P-201ENST00000364588 130 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 RNA5SP428-201ENST00000365129 132 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 LRRC37BP1-201ENST00000398851 714 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 RN7SKP213-201ENST00000410746 298 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 SEPT7P8-201ENST00000413308 775 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AL691482.1-201ENST00000453255 87 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 RN7SL214P-201ENST00000487317 265 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC008638.1-201ENST00000506035 866 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms