Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 Z98745.1-201ENST00000402553 494 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 MTND2P40-201ENST00000436718 841 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 AC098799.1-201ENST00000504752 800 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.21□□□□□ -1.9
PRKDCP78527 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.21□□□□□ -1.9
PRKDCP78527 MIR4325-201ENST00000583049 90 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC3.2□□□□□ -1.9
PRKDCP78527 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.2□□□□□ -1.9
PRKDCP78527 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC3.2□□□□□ -1.9
PRKDCP78527 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC3.2□□□□□ -1.9
PRKDCP78527 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 RNU1-83P-201ENST00000363426 164 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC3.2□□□□□ -1.9
PRKDCP78527 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 TBCAP1-201ENST00000436520 327 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 RNA5SP246-201ENST00000458909 119 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 SUMO2P19-201ENST00000518920 295 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.2□□□□□ -1.9
PRKDCP78527 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 AC055839.1-201ENST00000634467 498 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 AL034408.1-202ENST00000636088 415 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 AC000095.2-202ENST00000637415 154 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 MTND5P1-201ENST00000445440 1375 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 RNVU1-14-201ENST00000384770 164 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 RN7SKP235-201ENST00000410662 305 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 AC104306.1-201ENST00000449702 371 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 RPL21P8-201ENST00000465083 535 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 MEG8-217ENST00000556637 924 ntTSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 MIR5685-201ENST00000579080 79 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 AP005019.3-201ENST00000620418 560 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.2□□□□□ -1.9
PRKDCP78527 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC3.2□□□□□ -1.9
PRKDCP78527 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
PRKDCP78527 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.2□□□□□ -1.9
PRKDCP78527 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 RPL5P24-201ENST00000463742 885 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 MTND6P6-201ENST00000478031 263 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 PARP4P3-201ENST00000510265 317 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 AC027369.5-201ENST00000533838 755 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.2□□□□□ -1.9
PRKDCP78527 AC009120.7-201ENST00000623452 780 ntBASIC3.2□□□□□ -1.9
PRKDCP78527 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PRKDCP78527 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC3.2□□□□□ -1.9
PRKDCP78527 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.19□□□□□ -1.9
PRKDCP78527 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 SCARNA14-201ENST00000516903 136 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 RNU6-352P-201ENST00000516908 107 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PRKDCP78527 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC3.19□□□□□ -1.9
PRKDCP78527 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
PRKDCP78527 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 RNA5SP513-201ENST00000364648 118 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 QRSL1P2-201ENST00000418582 964 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PRKDCP78527 AC104763.1-201ENST00000475274 360 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 GAPDHP36-201ENST00000480688 918 ntBASIC3.19□□□□□ -1.9
PRKDCP78527 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.19□□□□□ -1.9
PRKDCP78527 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC3.19□□□□□ -1.9
PRKDCP78527 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.19□□□□□ -1.9
PRKDCP78527 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.19□□□□□ -1.9
PRKDCP78527 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms