Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 CASC19-281ENST00000642118 1554 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 OR9K1P-201ENST00000326513 941 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 MIR122-201ENST00000385044 85 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 RPL21P67-201ENST00000402896 478 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 HMGB3P19-201ENST00000403971 560 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AL445213.1-201ENST00000412589 747 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.38□□□□□ -1.55
PTPN9P43378 NANOGP4-201ENST00000427230 913 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 MTCYBP32-201ENST00000427945 1084 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 TRBV26OR9-2-201ENST00000432077 293 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 HMGB3P10-201ENST00000434734 572 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 RPS27P5-201ENST00000444247 244 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 FAR2P1-206ENST00000449736 709 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AC069277.2-201ENST00000454211 432 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AL389915.2-201ENST00000454576 441 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 OR2AF1P-201ENST00000454899 889 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 RN7SL172P-201ENST00000460535 303 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC009127.1-201ENST00000467090 155 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 RPS26P39-201ENST00000469206 341 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 CYCSP20-201ENST00000473154 315 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.38□□□□□ -1.55
PTPN9P43378 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.38□□□□□ -1.55
PTPN9P43378 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.38□□□□□ -1.55
PTPN9P43378 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 BUD31P1-201ENST00000521828 359 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 HAUS1P3-201ENST00000523909 662 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTPN9P43378 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.38□□□□□ -1.55
PTPN9P43378 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 AC087888.1-201ENST00000550884 1254 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 GLRXP2-201ENST00000555594 321 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AGGF1P9-201ENST00000561884 913 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.38□□□□□ -1.55
PTPN9P43378 MIR4489-201ENST00000578869 62 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 RN7SL753P-201ENST00000581238 290 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC096947.1-201ENST00000603233 470 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AC018695.5-201ENST00000605872 315 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 MIR6886-201ENST00000619864 61 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 FRG1EP-201ENST00000634469 770 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTPN9P43378 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTPN9P43378 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
PTPN9P43378 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTPN9P43378 MTCO1P11-201ENST00000429111 1528 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTPN9P43378 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.38□□□□□ -1.55
PTPN9P43378 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
PTPN9P43378 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
PTPN9P43378 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
PTPN9P43378 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.37□□□□□ -1.55
PTPN9P43378 PCAT14-202ENST00000627127 3935 ntBASIC5.37□□□□□ -1.55
PTPN9P43378 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.37□□□□□ -1.55
PTPN9P43378 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 RNU4-7P-201ENST00000364758 141 ntBASIC5.37□□□□□ -1.55
PTPN9P43378 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.37□□□□□ -1.55
PTPN9P43378 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
PTPN9P43378 RNU2-22P-201ENST00000411266 212 ntBASIC5.37□□□□□ -1.55
PTPN9P43378 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.37□□□□□ -1.55
PTPN9P43378 AP000534.2-201ENST00000412729 568 ntBASIC5.37□□□□□ -1.55
PTPN9P43378 AL158825.1-201ENST00000414735 521 ntBASIC5.37□□□□□ -1.55
PTPN9P43378 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
PTPN9P43378 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms