Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 AC027176.2-201ENST00000559166 746 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.7□□□□□ -1.66
SOX3P41225 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.7□□□□□ -1.66
SOX3P41225 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 AP002884.5-201ENST00000595053 1132 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AL627230.1-201ENST00000613077 211 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AL591926.8-201ENST00000616876 211 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC097372.4-201ENST00000625025 466 ntBASIC4.7□□□□□ -1.66
SOX3P41225 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.7□□□□□ -1.66
SOX3P41225 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 AC011503.2-201ENST00000594230 1500 ntBASIC4.7□□□□□ -1.66
SOX3P41225 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.7□□□□□ -1.66
SOX3P41225 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 MTND5P23-201ENST00000430812 1655 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC245100.2-201ENST00000454544 1679 ntBASIC4.7□□□□□ -1.66
SOX3P41225 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.69□□□□□ -1.66
SOX3P41225 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.69□□□□□ -1.66
SOX3P41225 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.69□□□□□ -1.66
SOX3P41225 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SOX3P41225 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 SNORA66-201ENST00000384792 133 ntBASIC4.69□□□□□ -1.66
SOX3P41225 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SOX3P41225 SNORD65-201ENST00000391079 73 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AL390316.1-201ENST00000406279 553 ntBASIC4.69□□□□□ -1.66
SOX3P41225 MIR1271-201ENST00000408537 86 ntBASIC4.69□□□□□ -1.66
SOX3P41225 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 RPS26P4-201ENST00000431743 355 ntBASIC4.69□□□□□ -1.66
SOX3P41225 ZNF965P-201ENST00000432501 817 ntBASIC4.69□□□□□ -1.66
SOX3P41225 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 BX842559.2-201ENST00000451418 605 ntBASIC4.69□□□□□ -1.66
SOX3P41225 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 AC010350.1-201ENST00000504908 231 ntBASIC4.69□□□□□ -1.66
SOX3P41225 NDUFB5P1-201ENST00000508134 564 ntBASIC4.69□□□□□ -1.66
SOX3P41225 COX6B1P5-201ENST00000509843 249 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AC105031.1-201ENST00000518550 476 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX3P41225 OR7E128P-201ENST00000532736 1024 ntBASIC4.69□□□□□ -1.66
SOX3P41225 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SOX3P41225 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX3P41225 OR1F2P-201ENST00000570470 933 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX3P41225 AC105254.2-201ENST00000603636 436 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AC024940.4-201ENST00000605507 246 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX3P41225 AC092953.2-201ENST00000608000 699 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AC016542.1-201ENST00000608259 493 ntBASIC4.69□□□□□ -1.66
SOX3P41225 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.69□□□□□ -1.66
SOX3P41225 AL159169.2-201ENST00000610061 1269 ntBASIC4.69□□□□□ -1.66
SOX3P41225 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.69□□□□□ -1.66
SOX3P41225 AC019080.5-201ENST00000624891 757 ntBASIC4.69□□□□□ -1.66
SOX3P41225 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.69□□□□□ -1.66
SOX3P41225 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX3P41225 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.69□□□□□ -1.66
SOX3P41225 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.69□□□□□ -1.66
SOX3P41225 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SOX3P41225 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX3P41225 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.68□□□□□ -1.66
SOX3P41225 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SOX3P41225 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
SOX3P41225 AC017002.4-201ENST00000604721 1525 ntBASIC4.68□□□□□ -1.66
SOX3P41225 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.68□□□□□ -1.66
SOX3P41225 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
SOX3P41225 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX3P41225 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 RN7SKP104-201ENST00000362605 328 ntBASIC4.68□□□□□ -1.66
SOX3P41225 RNA5SP123-201ENST00000363244 119 ntBASIC4.68□□□□□ -1.66
SOX3P41225 SNORD115-48-201ENST00000364764 76 ntBASIC4.68□□□□□ -1.66
SOX3P41225 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 AC013442.1-201ENST00000397347 228 ntBASIC4.68□□□□□ -1.66
SOX3P41225 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX3P41225 AL109941.1-201ENST00000401925 229 ntBASIC4.68□□□□□ -1.66
SOX3P41225 U3.32-201ENST00000408116 212 ntBASIC4.68□□□□□ -1.66
SOX3P41225 AL445213.1-201ENST00000412589 747 ntBASIC4.68□□□□□ -1.66
SOX3P41225 RPL36AP10-201ENST00000421785 322 ntBASIC4.68□□□□□ -1.66
SOX3P41225 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX3P41225 AL590762.4-201ENST00000425885 253 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms