Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.72□□□□□ -1.65
SHMT2P34897 E2F6P2-201ENST00000420708 748 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 SETP10-201ENST00000424368 814 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC4.72□□□□□ -1.65
SHMT2P34897 AC006466.1-201ENST00000438721 289 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.72□□□□□ -1.65
SHMT2P34897 OR1H1P-201ENST00000448731 937 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 RHEBP2-201ENST00000450289 600 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AURKAPS2-201ENST00000454983 333 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AL356390.1-201ENST00000455684 397 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 GYG1P1-201ENST00000460864 698 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AP000942.1-201ENST00000463969 747 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AC092324.1-201ENST00000468671 324 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SHMT2P34897 AC073358.1-201ENST00000505671 684 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.72□□□□□ -1.65
SHMT2P34897 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.72□□□□□ -1.65
SHMT2P34897 RN7SKP46-201ENST00000515942 234 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC4.72□□□□□ -1.65
SHMT2P34897 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.72□□□□□ -1.65
SHMT2P34897 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.72□□□□□ -1.65
SHMT2P34897 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.72□□□□□ -1.65
SHMT2P34897 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.72□□□□□ -1.65
SHMT2P34897 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.72□□□□□ -1.65
SHMT2P34897 CYCSP40-201ENST00000575927 294 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.72□□□□□ -1.65
SHMT2P34897 FAM25E-202ENST00000608562 189 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.72□□□□□ -1.65
SHMT2P34897 AP001005.3-201ENST00000622049 129 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 MTCO1P22-201ENST00000604619 1360 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.72□□□□□ -1.65
SHMT2P34897 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.72□□□□□ -1.65
SHMT2P34897 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
SHMT2P34897 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.72□□□□□ -1.65
SHMT2P34897 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SHMT2P34897 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SHMT2P34897 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SHMT2P34897 AL133268.1-201ENST00000405676 1401 ntBASIC4.72□□□□□ -1.65
SHMT2P34897 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
SHMT2P34897 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SHMT2P34897 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.71□□□□□ -1.65
SHMT2P34897 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
SHMT2P34897 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SHMT2P34897 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
SHMT2P34897 AC093775.1-201ENST00000624154 1868 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 AC093909.5-201ENST00000621839 1799 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 CR382285.2-201ENST00000624662 1495 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SHMT2P34897 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SHMT2P34897 AP001273.1-201ENST00000624493 3152 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 RNA5SP113-201ENST00000410486 84 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 AL356968.2-201ENST00000412769 1257 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.71□□□□□ -1.66
SHMT2P34897 OR13Z1P-201ENST00000416141 834 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 FABP7P2-201ENST00000429946 379 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 RPL7L1P1-201ENST00000448259 785 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 MTND6P5-201ENST00000448266 512 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.71□□□□□ -1.66
SHMT2P34897 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.71□□□□□ -1.66
SHMT2P34897 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.71□□□□□ -1.66
SHMT2P34897 RPL35AP28-201ENST00000459730 331 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 AC063943.1-201ENST00000465434 453 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 AC108751.2-201ENST00000469993 231 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.71□□□□□ -1.66
SHMT2P34897 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.71□□□□□ -1.66
SHMT2P34897 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.71□□□□□ -1.66
SHMT2P34897 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.71□□□□□ -1.66
SHMT2P34897 MORF4L1P3-201ENST00000525966 950 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 MIR4737-201ENST00000583979 81 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.71□□□□□ -1.66
SHMT2P34897 AL512782.1-201ENST00000603093 364 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 AL353600.1-201ENST00000608148 251 ntBASIC4.71□□□□□ -1.66
SHMT2P34897 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.71□□□□□ -1.66
SHMT2P34897 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.71□□□□□ -1.66
SHMT2P34897 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHMT2P34897 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
SHMT2P34897 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.71□□□□□ -1.66
SHMT2P34897 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.71□□□□□ -1.66
SHMT2P34897 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
SHMT2P34897 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHMT2P34897 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SHMT2P34897 RNA5SP87-201ENST00000384155 118 ntBASIC4.7□□□□□ -1.66
SHMT2P34897 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SHMT2P34897 AL035419.1-201ENST00000397037 564 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms