Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CCNHP1-201ENST00000513311 678 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.2□□□□□ -1.42
HOXC9P31274 AC097486.1-201ENST00000515331 210 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXC9P31274 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXC9P31274 HNRNPRP2-201ENST00000528421 743 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
HOXC9P31274 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXC9P31274 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC9P31274 MRPS21P9-201ENST00000571150 257 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 MIR3939-201ENST00000582614 106 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC9P31274 AL035461.2-201ENST00000619201 524 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 AL353684.1-201ENST00000622677 1120 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 AP000648.2-201ENST00000624182 404 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 AL121950.1-201ENST00000624993 2077 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC9P31274 SAMMSON-210ENST00000641260 1308 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 AL031119.1-201ENST00000404707 1879 ntBASIC6.19□□□□□ -1.42
HOXC9P31274 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
HOXC9P31274 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXC9P31274 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HOXC9P31274 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC9P31274 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXC9P31274 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC9P31274 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC9P31274 AC138701.1-201ENST00000524329 714 ntBASIC6.19□□□□□ -1.42
HOXC9P31274 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXC9P31274 AP000827.1-201ENST00000527814 258 ntBASIC6.19□□□□□ -1.42
HOXC9P31274 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXC9P31274 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXC9P31274 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC9P31274 DPPA3P2-201ENST00000553589 478 ntBASIC6.19□□□□□ -1.42
HOXC9P31274 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC9P31274 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXC9P31274 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC9P31274 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXC9P31274 AP005019.3-201ENST00000620418 560 ntBASIC6.19□□□□□ -1.42
HOXC9P31274 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HOXC9P31274 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
HOXC9P31274 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC9P31274 AC135352.1-201ENST00000506173 1418 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 AC025031.4-201ENST00000621248 3271 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 Z95114.1-201ENST00000624264 14574 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
HOXC9P31274 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC9P31274 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC9P31274 MAPK10-328ENST00000641553 4009 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC9P31274 Y_RNA.126-201ENST00000363382 111 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 OR6C69P-201ENST00000394268 893 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 ST13P16-201ENST00000401760 781 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 U3.35-201ENST00000408405 208 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC6.18□□□□□ -1.42
HOXC9P31274 AL606490.8-201ENST00000441624 319 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 RPL7AP52-201ENST00000458096 790 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 AC245028.2-201ENST00000458673 253 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC9P31274 MORF4L2P1-201ENST00000503761 858 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 IGLVIV-65-201ENST00000517313 360 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.18□□□□□ -1.42
HOXC9P31274 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.18□□□□□ -1.42
HOXC9P31274 MIR3160-1-201ENST00000577972 85 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
HOXC9P31274 Z95327.3-201ENST00000610385 572 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 AC063952.1-203ENST00000634410 658 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 FRG1EP-201ENST00000634469 770 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 GVINP1-202ENST00000531871 7271 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 OR4G1P-202ENST00000641173 1788 ntBASIC6.18□□□□□ -1.42
HOXC9P31274 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC6.18□□□□□ -1.42
HOXC9P31274 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC9P31274 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.18□□□□□ -1.42
HOXC9P31274 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.18□□□□□ -1.42
HOXC9P31274 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.17□□□□□ -1.42
HOXC9P31274 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
HOXC9P31274 AC009951.1-201ENST00000623674 2614 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC9P31274 ADAM5-202ENST00000399789 1942 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
HOXC9P31274 SALL4P2-201ENST00000423288 2910 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
HOXC9P31274 ACTR3BP5-201ENST00000448440 1479 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
HOXC9P31274 OR4K17-201ENST00000315543 1032 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
HOXC9P31274 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC9P31274 TMSB10P2-201ENST00000416049 131 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms