Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG1P18858 RNU4-21P-201ENST00000362802 126 ntBASIC7.03□□□□□ -1.28
LIG1P18858 RNU6-931P-201ENST00000363850 107 ntBASIC7.03□□□□□ -1.28
LIG1P18858 MIR137-201ENST00000385223 102 ntBASIC7.03□□□□□ -1.28
LIG1P18858 RPL23AP59-201ENST00000399415 461 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AL096800.1-201ENST00000405326 893 ntBASIC7.03□□□□□ -1.28
LIG1P18858 MIR1275-201ENST00000408770 80 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC7.03□□□□□ -1.28
LIG1P18858 HMGB3P31-201ENST00000413333 595 ntBASIC7.03□□□□□ -1.28
LIG1P18858 TAF13P2-201ENST00000416876 286 ntBASIC7.03□□□□□ -1.28
LIG1P18858 RPS26P13-201ENST00000419030 330 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AC027644.1-201ENST00000419595 298 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG1P18858 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG1P18858 AL596276.1-201ENST00000434465 418 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG1P18858 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG1P18858 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC7.03□□□□□ -1.28
LIG1P18858 ELOCP23-201ENST00000452014 332 ntBASIC7.03□□□□□ -1.28
LIG1P18858 HCG17-214ENST00000453558 732 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG1P18858 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG1P18858 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG1P18858 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG1P18858 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG1P18858 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG1P18858 IGHV4-55-201ENST00000520889 368 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG1P18858 AP001804.2-201ENST00000533932 910 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG1P18858 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG1P18858 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIG1P18858 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG1P18858 AC026898.1-201ENST00000586404 571 ntBASIC7.03□□□□□ -1.28
LIG1P18858 IGKV2OR2-1-201ENST00000605129 304 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AP002360.3-201ENST00000607673 710 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AL451074.6-201ENST00000608512 729 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AC007684.1-201ENST00000609671 477 ntBASIC7.03□□□□□ -1.28
LIG1P18858 AC008498.1-201ENST00000613012 531 ntBASIC7.03□□□□□ -1.28
LIG1P18858 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC7.03□□□□□ -1.28
LIG1P18858 SAMMSON-209ENST00000641222 1100 ntBASIC7.03□□□□□ -1.28
LIG1P18858 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC7.03□□□□□ -1.28
LIG1P18858 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG1P18858 AC015689.2-201ENST00000528172 1738 ntBASIC7.03□□□□□ -1.28
LIG1P18858 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG1P18858 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG1P18858 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG1P18858 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG1P18858 AC125336.1-201ENST00000508893 2827 ntBASIC7.03□□□□□ -1.28
LIG1P18858 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG1P18858 AP005432.1-201ENST00000580891 3485 ntBASIC7.03□□□□□ -1.28
LIG1P18858 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG1P18858 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIG1P18858 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.28
LIG1P18858 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
LIG1P18858 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC7.02□□□□□ -1.28
LIG1P18858 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
LIG1P18858 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIG1P18858 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
LIG1P18858 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
LIG1P18858 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG1P18858 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
LIG1P18858 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
LIG1P18858 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG1P18858 AC010132.2-201ENST00000295493 1043 ntBASIC7.02□□□□□ -1.29
LIG1P18858 IL6STP1-201ENST00000346911 1020 ntBASIC7.02□□□□□ -1.29
LIG1P18858 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
LIG1P18858 RN7SKP86-201ENST00000410454 332 ntBASIC7.02□□□□□ -1.29
LIG1P18858 RN7SKP263-201ENST00000411194 309 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG1P18858 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
LIG1P18858 RPL24P2-201ENST00000421023 475 ntBASIC7.02□□□□□ -1.29
LIG1P18858 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIG1P18858 Z99497.1-201ENST00000421282 135 ntBASIC7.02□□□□□ -1.29
LIG1P18858 ZNF863P-201ENST00000426746 417 ntBASIC7.02□□□□□ -1.29
LIG1P18858 FGF12-202ENST00000430714 603 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG1P18858 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG1P18858 IGLV3-4-201ENST00000432300 244 ntBASIC7.02□□□□□ -1.29
LIG1P18858 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
LIG1P18858 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG1P18858 GAPDHP23-201ENST00000444823 993 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG1P18858 AC007383.1-201ENST00000445875 636 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG1P18858 RPL21P134-201ENST00000453468 483 ntBASIC7.02□□□□□ -1.29
LIG1P18858 RNU7-140P-201ENST00000459546 60 ntBASIC7.02□□□□□ -1.29
LIG1P18858 RN7SL369P-201ENST00000477138 299 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AC091959.2-201ENST00000477363 321 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AC025459.1-201ENST00000504072 156 ntBASIC7.02□□□□□ -1.29
LIG1P18858 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG1P18858 AC073358.1-201ENST00000505671 684 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG1P18858 IGHVIII-38-1-201ENST00000521454 282 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AP001317.1-201ENST00000531194 960 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG1P18858 AP001858.2-201ENST00000536213 601 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AL358913.1-201ENST00000554342 121 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG1P18858 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG1P18858 CYP2C60P-201ENST00000566088 139 ntBASIC7.02□□□□□ -1.29
LIG1P18858 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms