Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RPS4XP12-201ENST00000461747 709 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.62□□□□□ -1.67
COL6A3P12111 AC020634.1-201ENST00000608701 549 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.62□□□□□ -1.67
COL6A3P12111 AC009643.2-201ENST00000603543 1448 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL6A3P12111 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.62□□□□□ -1.67
COL6A3P12111 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.62□□□□□ -1.67
COL6A3P12111 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.62□□□□□ -1.67
COL6A3P12111 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.62□□□□□ -1.67
COL6A3P12111 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.62□□□□□ -1.67
COL6A3P12111 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.62□□□□□ -1.67
COL6A3P12111 AC104984.5-201ENST00000586878 94 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 AC092354.2-201ENST00000607786 514 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 AC013412.1-201ENST00000610687 192 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 AC108359.1-201ENST00000616451 1211 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
COL6A3P12111 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL6A3P12111 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 CBX1P3-201ENST00000413296 527 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 MFSD13B-201ENST00000420133 1290 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.61□□□□□ -1.67
COL6A3P12111 SEPT10P1-201ENST00000517342 1162 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 MIR4433B-201ENST00000581329 102 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A3P12111 MIR7151-201ENST00000617477 60 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
COL6A3P12111 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC4.61□□□□□ -1.67
COL6A3P12111 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL6A3P12111 AC245052.5-201ENST00000416320 649 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 AC025164.1-201ENST00000496249 478 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.61□□□□□ -1.67
COL6A3P12111 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
COL6A3P12111 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 FZD10-AS1-201ENST00000505807 10193 ntTSL 2 BASIC4.61□□□□□ -1.67
COL6A3P12111 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC4.61□□□□□ -1.67
COL6A3P12111 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
COL6A3P12111 RN7SKP235-201ENST00000410662 305 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A3P12111 AC005255.1-201ENST00000593748 216 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 AL161729.3-201ENST00000603533 673 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 AC136601.2-201ENST00000604356 474 ntBASIC4.61□□□□□ -1.67
COL6A3P12111 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A3P12111 MR1-209ENST00000617803 7584 ntTSL 5 BASIC4.61□□□□□ -1.67
COL6A3P12111 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A3P12111 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A3P12111 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC4.6□□□□□ -1.67
COL6A3P12111 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A3P12111 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
COL6A3P12111 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A3P12111 AP000357.1-201ENST00000409926 1165 ntBASIC4.6□□□□□ -1.67
COL6A3P12111 AC017019.1-201ENST00000426129 261 ntBASIC4.6□□□□□ -1.67
COL6A3P12111 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.6□□□□□ -1.67
COL6A3P12111 RNU1-95P-201ENST00000516357 160 ntBASIC4.6□□□□□ -1.67
COL6A3P12111 RNU1-128P-201ENST00000516704 160 ntBASIC4.6□□□□□ -1.67
COL6A3P12111 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A3P12111 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL6A3P12111 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A3P12111 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A3P12111 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A3P12111 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL6A3P12111 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL6A3P12111 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL6A3P12111 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A3P12111 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A3P12111 RPL17P2-201ENST00000491913 451 ntBASIC4.6□□□□□ -1.67
COL6A3P12111 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A3P12111 FCF1-203ENST00000553615 954 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A3P12111 NDUFB4P11-201ENST00000560510 395 ntBASIC4.6□□□□□ -1.67
COL6A3P12111 AL354798.1-201ENST00000622505 329 ntBASIC4.6□□□□□ -1.67
COL6A3P12111 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A3P12111 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A3P12111 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC4.6□□□□□ -1.67
COL6A3P12111 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A3P12111 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A3P12111 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A3P12111 BIVM-ERCC5-201ENST00000602836 5143 ntAPPRIS P5 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 RNU2-65P-201ENST00000410162 185 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 RN7SKP156-201ENST00000410308 342 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms