Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL354685.2-201ENST00000448218 1447 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 SNORA5.1-201ENST00000384275 131 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 MTATP6P27-201ENST00000416987 621 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 RPL12P43-201ENST00000420608 499 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL109913.1-201ENST00000421173 514 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 VN1R20P-201ENST00000425215 966 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 RPS27AP6-201ENST00000427962 448 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 USP12PX-201ENST00000432383 1057 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 MTND3P21-201ENST00000433774 331 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 KCTD9P3-201ENST00000434597 1169 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 B3GNT2P1-201ENST00000434960 952 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC099670.2-201ENST00000435130 321 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 COX7BP2-201ENST00000437976 242 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 MTND1P30-201ENST00000441241 901 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 IGBP1P3-201ENST00000447449 1000 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 KF459542.1-201ENST00000450908 553 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 RPL23AP23-201ENST00000452590 471 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC104849.1-201ENST00000462623 405 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 RN7SL352P-201ENST00000466002 277 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 H3F3AP5-201ENST00000475267 429 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 EIF4E2P2-201ENST00000492033 736 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC004069.2-201ENST00000505438 1114 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC090958.1-201ENST00000511122 351 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 TOMM22P4-201ENST00000511318 336 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 RNU6-405P-201ENST00000516637 110 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 NPM1P6-201ENST00000521088 871 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC004923.2-201ENST00000529649 369 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 OR5AL2P-201ENST00000532185 920 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AP000916.1-201ENST00000533869 835 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 OR11H3P-201ENST00000554547 982 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC104229.1-201ENST00000561364 255 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC015688.2-201ENST00000584523 262 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC060780.2-201ENST00000589047 198 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL121655.1-201ENST00000605811 308 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 PART1_1.1-201ENST00000611761 217 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AL356321.1-201ENST00000621360 228 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC010325.3-201ENST00000641084 394 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 AC092447.7-201ENST00000422212 1621 ntBASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC020656.2-201ENST00000613291 5309 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 MIR191-201ENST00000384873 92 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 VDAC2P1-201ENST00000399358 958 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 RN7SKP142-201ENST00000411236 328 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC098592.1-201ENST00000419352 333 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 ARL6IP1P2-201ENST00000431356 563 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 LINC00328-2P-201ENST00000436585 219 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 OR3D1P-201ENST00000438288 955 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 RPL23AP60-201ENST00000450011 454 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 RPS6P4-201ENST00000494693 758 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 BNIP3P41-201ENST00000503774 571 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 RNU6-718P-201ENST00000516166 105 ntBASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms