Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 RNU1-74P-201ENST00000384108 171 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 MIR137-201ENST00000385223 102 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 EI24P3-201ENST00000399046 1062 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 GPS2P1-201ENST00000411761 986 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 FAR2P2-201ENST00000413041 594 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 BTF3P9-201ENST00000418784 283 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC245028.1-201ENST00000423259 256 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 FAR2P4-202ENST00000425399 584 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC112498.1-201ENST00000444401 332 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 NOP56P2-201ENST00000447491 769 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 TPT1P13-201ENST00000449760 499 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC091180.1-201ENST00000462104 372 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 OR11I1P-201ENST00000486033 954 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 FABP5P6-201ENST00000510588 409 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 IMPA1P1-201ENST00000510718 842 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 RN7SKP34-201ENST00000516142 244 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC067904.2-201ENST00000517322 1283 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 GSTP1P1-201ENST00000548078 319 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 NMNAT1P1-201ENST00000554095 876 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC079075.1-201ENST00000559543 878 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 MIR3908-201ENST00000579798 126 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC105254.2-201ENST00000603636 436 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 BNIP3P35-201ENST00000604530 490 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC135803.1-201ENST00000608748 565 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AL133445.2-201ENST00000611191 527 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AL158062.1-201ENST00000619632 745 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC010435.1-201ENST00000623353 1177 ntBASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC3Q9BQI4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 PCAT14-202ENST00000627127 3935 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 SPATA2P1-201ENST00000431223 2055 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 RNVU1-6-201ENST00000364688 164 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MIR192-201ENST00000384915 110 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC016397.1-201ENST00000412463 242 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 HSPD1P12-201ENST00000429127 1069 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MTND4LP7-201ENST00000431728 294 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 RPL17P35-201ENST00000432217 549 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AL137845.2-201ENST00000444292 988 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC009220.1-201ENST00000451614 275 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AP002345.1-201ENST00000456493 928 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC020779.1-201ENST00000478757 796 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 RN7SL319P-201ENST00000480656 221 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 RN7SL814P-201ENST00000487715 300 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 CEACAMP10-202ENST00000495431 496 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MTND3P24-201ENST00000506306 329 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC008628.1-201ENST00000508663 265 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 OR51K1P-201ENST00000510214 950 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 HMGB1P47-201ENST00000511281 589 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 OR7H2P-201ENST00000513483 306 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 RNA5SP43-201ENST00000516559 110 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 AC027176.2-201ENST00000559166 746 ntBASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC3Q9BQI4 MIR4270-201ENST00000581799 70 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms